Геном прокариот/Материалы:NC 007354
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LOCUS NC_007354 1315030 bp DNA circular BCT 16-AUG-2007
DEFINITION Ehrlichia canis str. Jake, complete genome.
ACCESSION NC_007354
VERSION NC_007354.1 GI:73666633
KEYWORDS .
SOURCE Ehrlichia canis str. Jake
ORGANISM Ehrlichia canis str. Jake
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
Anaplasmataceae; Ehrlichia.
REFERENCE 1 (bases 1 to 1315030)
AUTHORS Mavromatis,K., Doyle,C.K., Lykidis,A., Ivanova,N., Francino,M.P.,
Chain,P., Shin,M., Malfatti,S., Larimer,F., Copeland,A.,
Detter,J.C., Land,M., Richardson,P.M., Yu,X.J., Walker,D.H.,
McBride,J.W. and Kyrpides,N.C.
TITLE The genome of the obligately intracellular bacterium Ehrlichia
canis reveals themes of complex membrane structure and immune
evasion strategies
JOURNAL J. Bacteriol. 188 (11), 4015-4023 (2006)
PUBMED 16707693
REFERENCE 2 (bases 1 to 1315030)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-AUG-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1315030)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Mavrommatis,K. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000107.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available fro Jere McBride
(jemcbrid@utmb.edu)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LLNL
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 338 | 415 | + | 78 | 73666633 | Ecaj_R0001 | - | 11 Arg tRNA |
| 2234 | 2308 | - | 75 | 73666633 | Ecaj_R0002 | - | 05 Gln tRNA |
| 27185 | 27275 | - | 91 | 73666633 | Ecaj_R0003 | - | 15 Leu tRNA |
| 47712 | 47785 | + | 74 | 73666633 | Ecaj_R0004 | - | 13 Val tRNA |
| 69588 | 69660 | + | 73 | 73666633 | Ecaj_R0005 | - | 10 Lys tRNA |
| 75718 | 75792 | - | 75 | 73666633 | Ecaj_R0006 | - | 19 Cys tRNA |
| 156010 | 156093 | - | 84 | 73666633 | Ecaj_R0007 | - | 15 Leu tRNA |
| 167065 | 167143 | + | 79 | 73666633 | Ecaj_R0008 | - | 03 Pro tRNA |
| 167568 | 167655 | - | 88 | 73666633 | Ecaj_R0009 | - | 08 Ser tRNA |
| 190571 | 190643 | + | 73 | 73666633 | Ecaj_R0010 | - | 02 Ala tRNA |
| 245349 | 245425 | + | 77 | 73666633 | Ecaj_R0011 | - | 20 Trp tRNA |
| 259386 | 259459 | + | 74 | 73666633 | Ecaj_R0012 | - | 11 Arg tRNA |
| 285955 | 287439 | + | 1485 | 73666633 | Ecaj_R0013 | - | 16S ribosomal RNA |
| 292601 | 292687 | + | 87 | 73666633 | Ecaj_R0014 | - | 15 Leu tRNA |
| 300143 | 300215 | + | 73 | 73666633 | Ecaj_R0015 | - | 10 Lys tRNA |
| 300396 | 300479 | + | 84 | 73666633 | Ecaj_R0016 | - | 15 Leu tRNA |
| 307599 | 307673 | + | 75 | 73666633 | Ecaj_R0017 | - | 16 Met tRNA |
| 360915 | 360990 | + | 76 | 73666633 | Ecaj_R0018 | - | 01 Gly tRNA |
| 412218 | 412291 | + | 74 | 73666633 | Ecaj_R0019 | - | 06 Asp tRNA |
| 488998 | 489297 | - | 300 | 73666633 | Ecaj_R0020 | - | tmRNA |
| 489431 | 489503 | - | 73 | 73666633 | Ecaj_R0021 | - | 07 Asn tRNA |
| 494191 | 494263 | - | 73 | 73666633 | Ecaj_R0022 | - | 17 Phe tRNA |
| 503811 | 503887 | - | 77 | 73666633 | Ecaj_R0023 | - | 11 Arg tRNA |
| 548477 | 548551 | + | 75 | 73666633 | Ecaj_R0024 | - | 16 Met tRNA |
| 557852 | 557927 | + | 76 | 73666633 | Ecaj_R0025 | - | 16 Met tRNA |
| 571075 | 571165 | + | 91 | 73666633 | Ecaj_R0026 | - | 08 Ser tRNA |
| 592048 | 592120 | + | 73 | 73666633 | Ecaj_R0027 | - | 12 Thr tRNA |
| 640728 | 640798 | - | 71 | 73666633 | Ecaj_R0028 | - | 12 Thr tRNA |
| 668794 | 668877 | + | 84 | 73666633 | Ecaj_R0029 | - | 15 Leu tRNA |
| 710743 | 710819 | - | 77 | 73666633 | Ecaj_R0030 | - | 14 Ile tRNA |
| 727749 | 727825 | - | 77 | 73666633 | Ecaj_R0031 | - | 03 Pro tRNA |
| 784352 | 784424 | - | 73 | 73666633 | Ecaj_R0032 | - | 11 Arg tRNA |
| 825376 | 825448 | - | 73 | 73666633 | Ecaj_R0033 | - | 04 Glu tRNA |
| 865093 | 865163 | - | 71 | 73666633 | Ecaj_R0034 | - | 01 Gly tRNA |
| 865171 | 865253 | - | 83 | 73666633 | Ecaj_R0035 | - | 18 Tyr tRNA |
| 922361 | 922647 | + | 287 | 73666633 | Ecaj_R0036 | - | RNA component of RNaseP |
| 958691 | 958763 | - | 73 | 73666633 | Ecaj_R0037 | - | 13 Val tRNA |
| 1098799 | 1098918 | - | 120 | 73666633 | Ecaj_R0038 | - | 5S ribosomal RNA |
| 1098983 | 1101781 | - | 2799 | 73666633 | Ecaj_R0039 | - | 23S ribosomal RNA |
| 1115358 | 1115430 | - | 73 | 73666633 | Ecaj_R0040 | - | 09 His tRNA |
| 1233731 | 1233821 | + | 91 | 73666633 | Ecaj_R0041 | - | 08 Ser tRNA |
| 1309522 | 1309613 | + | 92 | 73666633 | Ecaj_R0042 | - | SRP RNA; RNA component of signal recognition particle |

