Геном прокариот/Материалы:NC 007404
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LOCUS NC_007404 2909809 bp DNA circular BCT 07-FEB-2006
DEFINITION Thiobacillus denitrificans ATCC 25259, complete genome.
ACCESSION NC_007404
VERSION NC_007404.1 GI:74316018
KEYWORDS .
SOURCE Thiobacillus denitrificans ATCC 25259
ORGANISM Thiobacillus denitrificans ATCC 25259
Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales;
Hydrogenophilaceae; Thiobacillus.
REFERENCE 1 (bases 1 to 2909809)
AUTHORS Beller,H.R., Chain,P.S., Letain,T.E., Chakicherla,A., Larimer,F.W.,
Richardson,P.M., Coleman,M.A., Wood,A.P. and Kelly,D.P.
CONSRTM US DOE Joint Genome Institute
TITLE The Genome Sequence of the Obligately Chemolithoautotrophic,
Facultatively Anaerobic Bacterium Thiobacillus denitrificans
JOURNAL J. Bacteriol. 188 (4), 1473-1488 (2006)
PUBMED 16452431
REFERENCE 2 (bases 1 to 2909809)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-SEP-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2909809)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Kyripides,N., Lykidis,A. and Richardson,P.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000116.
URL -- http://www.jgi.doe.gov
Source DNA available from Harry Beller (beller2@llnl.gov)
Bacteria available from ATCC: ATCC 25259
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 90806 | 90881 | - | 76 | 74316018 | Tbd_R0001 | - | 17 Phe tRNA |
| 116736 | 116972 | + | 237 | 74316018 | Tbd_R0002 | - | RNA component of RNaseP |
| 157660 | 157736 | + | 77 | 74316018 | Tbd_R0003 | - | 11 Arg tRNA |
| 415383 | 415457 | + | 75 | 74316018 | Tbd_R0004 | - | 05 Gln tRNA |
| 418981 | 419065 | + | 85 | 74316018 | Tbd_R0005 | - | 18 Tyr tRNA |
| 419145 | 419218 | + | 74 | 74316018 | Tbd_R0006 | - | 01 Gly tRNA |
| 419255 | 419329 | + | 75 | 74316018 | Tbd_R0007 | - | 12 Thr tRNA |
| 420743 | 420818 | + | 76 | 74316018 | Tbd_R0008 | - | 20 Trp tRNA |
| 478097 | 479599 | + | 1503 | 74316018 | Tbd_R0009 | - | 16S ribosomal RNA |
| 479682 | 479758 | + | 77 | 74316018 | Tbd_R0010 | - | 14 Ile tRNA |
| 479898 | 479973 | + | 76 | 74316018 | Tbd_R0011 | - | 02 Ala tRNA |
| 480436 | 483317 | + | 2882 | 74316018 | Tbd_R0012 | - | 23S ribosomal RNA |
| 483460 | 483571 | + | 112 | 74316018 | Tbd_R0013 | - | 5S ribosomal RNA |
| 544561 | 544659 | + | 99 | 74316018 | Tbd_R0014 | - | SRP RNA; RNA component of signal recognitionparticle |
| 636133 | 636219 | - | 87 | 74316018 | Tbd_R0015 | - | 15 Leu tRNA |
| 729015 | 729090 | - | 76 | 74316018 | Tbd_R0016 | - | 09 His tRNA |
| 729127 | 729203 | - | 77 | 74316018 | Tbd_R0017 | - | 11 Arg tRNA |
| 729235 | 729311 | - | 77 | 74316018 | Tbd_R0018 | - | 03 Pro tRNA |
| 741047 | 741133 | - | 87 | 74316018 | Tbd_R0019 | - | 15 Leu tRNA |
| 741159 | 741232 | - | 74 | 74316018 | Tbd_R0020 | - | 19 Cys tRNA |
| 741302 | 741377 | - | 76 | 74316018 | Tbd_R0021 | - | 01 Gly tRNA |
| 913834 | 913910 | - | 77 | 74316018 | Tbd_R0022 | - | 03 Pro tRNA |
| 1004945 | 1005311 | - | 367 | 74316018 | Tbd_R0023 | - | tmRNA |
| 1032021 | 1032097 | - | 77 | 74316018 | Tbd_R0024 | - | 11 Arg tRNA |
| 1032154 | 1032247 | - | 94 | 74316018 | Tbd_R0025 | - | 08 Ser tRNA |
| 1075594 | 1075670 | + | 77 | 74316018 | Tbd_R0026 | - | 13 Val tRNA |
| 1083358 | 1083434 | + | 77 | 74316018 | Tbd_R0027 | - | 03 Pro tRNA |
| 1196796 | 1196880 | + | 85 | 74316018 | Tbd_R0028 | - | 15 Leu tRNA |
| 1289997 | 1290086 | + | 90 | 74316018 | Tbd_R0029 | - | 08 Ser tRNA |
| 1621594 | 1621684 | - | 91 | 74316018 | Tbd_R0030 | - | 08 Ser tRNA |
| 1655634 | 1655709 | + | 76 | 74316018 | Tbd_R0031 | - | 07 Asn tRNA |
| 1760787 | 1760863 | - | 77 | 74316018 | Tbd_R0032 | - | 06 Asp tRNA |
| 1760909 | 1760984 | - | 76 | 74316018 | Tbd_R0033 | - | 13 Val tRNA |
| 1787407 | 1787491 | - | 85 | 74316018 | Tbd_R0034 | - | 15 Leu tRNA |
| 1819039 | 1819113 | - | 75 | 74316018 | Tbd_R0035 | - | 13 Val tRNA |
| 1820647 | 1820722 | + | 76 | 74316018 | Tbd_R0036 | - | 12 Thr tRNA |
| 1859921 | 1860032 | - | 112 | 74316018 | Tbd_R0037 | - | 5S ribosomal RNA |
| 1860219 | 1863117 | - | 2899 | 74316018 | Tbd_R0038 | - | 23S ribosomal RNA |
| 1863553 | 1863628 | - | 76 | 74316018 | Tbd_R0039 | - | 02 Ala tRNA |
| 1863768 | 1863844 | - | 77 | 74316018 | Tbd_R0040 | - | 14 Ile tRNA |
| 1863920 | 1865429 | - | 1510 | 74316018 | Tbd_R0041 | - | 16S ribosomal RNA |
| 1865716 | 1865792 | - | 77 | 74316018 | Tbd_R0042 | - | 16 Met tRNA |
| 1929025 | 1929100 | - | 76 | 74316018 | Tbd_R0043 | - | 12 Thr tRNA |
| 2087047 | 2087122 | + | 76 | 74316018 | Tbd_R0044 | - | 02 Ala tRNA |
| 2087354 | 2087429 | + | 76 | 74316018 | Tbd_R0045 | - | 04 Glu tRNA |
| 2093605 | 2093680 | - | 76 | 74316018 | Tbd_R0046 | - | 11 Arg tRNA |
| 2166984 | 2167070 | - | 87 | 74316018 | Tbd_R0047 | - | 15 Leu tRNA |
| 2214978 | 2215051 | + | 74 | 74316018 | Tbd_R0048 | - | 01 Gly tRNA |
| 2281490 | 2281565 | - | 76 | 74316018 | Tbd_R0049 | - | 10 Lys tRNA |
| 2462035 | 2462111 | + | 77 | 74316018 | Tbd_R0050 | - | 16 Met tRNA |
| 2789044 | 2789120 | - | 77 | 74316018 | Tbd_R0051 | - | 16 Met tRNA |
| 2812950 | 2813025 | + | 76 | 74316018 | Tbd_R0052 | - | 02 Ala tRNA |

