Геном прокариот/Материалы:NC 007406
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LOCUS NC_007406 3402093 bp DNA circular BCT 19-OCT-2006
DEFINITION Nitrobacter winogradskyi Nb-255, complete genome.
ACCESSION NC_007406
VERSION NC_007406.1 GI:75674199
KEYWORDS .
SOURCE Nitrobacter winogradskyi Nb-255
ORGANISM Nitrobacter winogradskyi Nb-255
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Nitrobacter.
REFERENCE 1 (bases 1 to 3402093)
AUTHORS Starkenburg,S.R., Chain,P.S., Sayavedra-Soto,L.A., Hauser,L.,
Land,M.L., Larimer,F.W., Malfatti,S.A., Klotz,M.G., Bottomley,P.J.,
Arp,D.J. and Hickey,W.J.
TITLE Genome sequence of the chemolithoautotrophic nitrite-oxidizing
bacterium Nitrobacter winogradskyi Nb-255
JOURNAL Appl. Environ. Microbiol. 72 (3), 2050-2063 (2006)
PUBMED 16517654
REFERENCE 2 (bases 1 to 3402093)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyripides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Nitrobacter winogradskyi Nb-255
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3402093)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (15-SEP-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 3402093)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyripides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000115.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LLNL
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 87473 | 87547 | - | 75 | 75674199 | Nwi_R0001 | - | 01 Gly tRNA |
| 167120 | 167193 | + | 74 | 75674199 | Nwi_R0002 | - | 01 Gly tRNA |
| 194684 | 194770 | + | 87 | 75674199 | Nwi_R0003 | - | 15 Leu tRNA |
| 241612 | 241687 | + | 76 | 75674199 | Nwi_R0004 | - | 02 Ala tRNA |
| 274519 | 274593 | - | 75 | 75674199 | Nwi_R0005 | - | 12 Thr tRNA |
| 310616 | 310691 | - | 76 | 75674199 | Nwi_R0006 | - | 17 Phe tRNA |
| 416069 | 416171 | + | 103 | 75674199 | Nwi_R0007 | - | SRP RNA; RNA component of signal recognitionparticle |
| 494086 | 494175 | - | 90 | 75674199 | Nwi_R0008 | - | 08 Ser tRNA |
| 512678 | 512754 | + | 77 | 75674199 | Nwi_R0009 | - | 11 Arg tRNA |
| 533217 | 533292 | + | 76 | 75674199 | Nwi_R0010 | - | 12 Thr tRNA |
| 535345 | 535420 | - | 76 | 75674199 | Nwi_R0011 | - | 02 Ala tRNA |
| 589505 | 589580 | + | 76 | 75674199 | Nwi_R0012 | - | 16 Met tRNA |
| 638302 | 639791 | + | 1490 | 75674199 | Nwi_R0013 | - | 16S ribosomal RNA |
| 639999 | 640075 | + | 77 | 75674199 | Nwi_R0014 | - | 14 Ile tRNA |
| 640108 | 640183 | + | 76 | 75674199 | Nwi_R0015 | - | 02 Ala tRNA |
| 640614 | 643442 | + | 2829 | 75674199 | Nwi_R0016 | - | 23S ribosomal RNA |
| 643504 | 643618 | + | 115 | 75674199 | Nwi_R0017 | - | 5S ribosomal RNA |
| 684778 | 684854 | + | 77 | 75674199 | Nwi_R0018 | - | 16 Met tRNA |
| 718800 | 718874 | + | 75 | 75674199 | Nwi_R0019 | - | 05 Gln tRNA |
| 826066 | 826150 | - | 85 | 75674199 | Nwi_R0020 | - | 15 Leu tRNA |
| 915544 | 915620 | + | 77 | 75674199 | Nwi_R0021 | - | 16 Met tRNA |
| 1113523 | 1113599 | + | 77 | 75674199 | Nwi_R0022 | - | 09 His tRNA |
| 1377955 | 1378028 | + | 74 | 75674199 | Nwi_R0023 | - | 05 Gln tRNA |
| 1475662 | 1475737 | - | 76 | 75674199 | Nwi_R0024 | - | 20 Trp tRNA |
| 1533855 | 1533932 | + | 78 | 75674199 | Nwi_R0025 | - | 03 Pro tRNA |
| 1619556 | 1619645 | + | 90 | 75674199 | Nwi_R0026 | - | 08 Ser tRNA |
| 1652754 | 1652827 | - | 74 | 75674199 | Nwi_R0027 | - | 19 Cys tRNA |
| 1682382 | 1682458 | + | 77 | 75674199 | Nwi_R0028 | - | 11 Arg tRNA |
| 1709371 | 1709448 | + | 78 | 75674199 | Nwi_R0029 | - | 11 Arg tRNA |
| 1755655 | 1755731 | - | 77 | 75674199 | Nwi_R0030 | - | 03 Pro tRNA |
| 1759786 | 1759860 | + | 75 | 75674199 | Nwi_R0031 | - | 04 Glu tRNA |
| 1890319 | 1890403 | - | 85 | 75674199 | Nwi_R0032 | - | 15 Leu tRNA |
| 1906243 | 1906319 | + | 77 | 75674199 | Nwi_R0033 | - | 11 Arg tRNA |
| 1951048 | 1951122 | + | 75 | 75674199 | Nwi_R0034 | - | 07 Asn tRNA |
| 1962421 | 1962496 | + | 76 | 75674199 | Nwi_R0035 | - | 10 Lys tRNA |
| 2073336 | 2073412 | - | 77 | 75674199 | Nwi_R0036 | - | 06 Asp tRNA |
| 2078266 | 2078342 | + | 77 | 75674199 | Nwi_R0037 | - | 13 Val tRNA |
| 2085537 | 2085621 | - | 85 | 75674199 | Nwi_R0038 | - | 15 Leu tRNA |
| 2121035 | 2121128 | + | 94 | 75674199 | Nwi_R0039 | - | 08 Ser tRNA |
| 2244358 | 2244431 | - | 74 | 75674199 | Nwi_R0040 | - | 01 Gly tRNA |
| 2246251 | 2246336 | + | 86 | 75674199 | Nwi_R0041 | - | 18 Tyr tRNA |
| 2253607 | 2253681 | + | 75 | 75674199 | Nwi_R0042 | - | 12 Thr tRNA |
| 2381182 | 2381270 | - | 89 | 75674199 | Nwi_R0043 | - | 15 Leu tRNA |
| 2555231 | 2555306 | - | 76 | 75674199 | Nwi_R0044 | - | 10 Lys tRNA |
| 2573201 | 2573521 | + | 321 | 75674199 | Nwi_R0045 | - | tmRNA |
| 2654247 | 2654321 | + | 75 | 75674199 | Nwi_R0046 | - | 04 Glu tRNA |
| 2671615 | 2671689 | + | 75 | 75674199 | Nwi_R0047 | - | Xaa tRNA |
| 2672041 | 2672113 | - | 73 | 75674199 | Nwi_R0048 | - | Xaa tRNA |
| 2681975 | 2682360 | + | 386 | 75674199 | Nwi_R0049 | - | RNA component of RNaseP |
| 2928541 | 2928617 | - | 77 | 75674199 | Nwi_R0050 | - | 03 Pro tRNA |
| 3069030 | 3069119 | - | 90 | 75674199 | Nwi_R0051 | - | 08 Ser tRNA |
| 3180981 | 3181055 | - | 75 | 75674199 | Nwi_R0052 | - | 13 Val tRNA |
| 3259630 | 3259704 | + | 75 | 75674199 | Nwi_R0053 | - | 13 Val tRNA |
| 3342499 | 3342575 | + | 77 | 75674199 | Nwi_R0054 | - | 11 Arg tRNA |
| 3397654 | 3397730 | - | 77 | 75674199 | Nwi_R0055 | - | 11 Arg tRNA |

