Геном прокариот/Материалы:NC 007498
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LOCUS NC_007498 3665893 bp DNA circular BCT 18-MAY-2007
DEFINITION Pelobacter carbinolicus DSM 2380, complete genome.
ACCESSION NC_007498
VERSION NC_007498.2 GI:90960985
KEYWORDS .
SOURCE Pelobacter carbinolicus DSM 2380
ORGANISM Pelobacter carbinolicus DSM 2380
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
Pelobacteraceae; Pelobacter.
REFERENCE 1 (bases 1 to 3665893)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Chertkov,O.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Ivanova,N., Lovley,D.R., Blunt-Harris,E.L., DiDonato,R.,
Aklujkar,M., Haveman,S., Butler,J., Chaudhuri,S.K., DiDonato,L.N.,
Ding,Y.R., Glaven,R., Segura-Gonzalez,D., Izallalen,M., Kaye,J.,
Kim,B.C., Juarez-Lopez,K., Mester,T., Postier,B., Risso,C.,
Tran,H., Brown,P., Nicoll,J.S., Huang,K., Keller,K., Alm,E. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Pelobacter carbinolicus DSM 2380
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3665893)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Chertkov,O.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Ivanova,N., Lovley,D.R., Blunt-Harris,E.L., DiDonato,R.,
Aklujkar,M., Haveman,S., Butler,J., Chaudhuri,S.K., DiDonato,L.N.,
Ding,Y.R., Glaven,R., Segura-Gonzalez,D., Izallalen,M., Kaye,J.,
Kim,B.C., Juarez-Lopez,K., Mester,T., Postier,B., Risso,C.,
Tran,H., Brown,P., Nicoll,J.S., Huang,K., Keller,K., Alm,E. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (20-SEP-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REMARK Sequence update by submitter
REFERENCE 3 (bases 1 to 3665893)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 3665893)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chertkov,O.,
Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000142.
On Apr 1, 2006 this sequence version replaced gi:77917618.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3436109
Source DNA available from Derek Lovley (dlovley@umass.edu)
Bacteria available from DSMZ 2380
Contacts: Derek Lovley (dlovley@umass.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 262331 | 262406 | + | 76 | 90960985 | Pcar_R0001 | - | 10 Lys tRNA |
| 262412 | 262489 | + | 78 | 90960985 | Pcar_R0002 | - | 04 Glu tRNA |
| 263125 | 263200 | + | 76 | 90960985 | Pcar_R0003 | - | 10 Lys tRNA |
| 263206 | 263283 | + | 78 | 90960985 | Pcar_R0004 | - | 04 Glu tRNA |
| 409594 | 409679 | + | 86 | 90960985 | Pcar_R0005 | - | 08 Ser tRNA |
| 409807 | 409900 | + | 94 | 90960985 | Pcar_R0006 | - | 08 Ser tRNA |
| 409987 | 410063 | + | 77 | 90960985 | Pcar_R0007 | - | 11 Arg tRNA |
| 410607 | 410694 | + | 88 | 90960985 | Pcar_R0008 | - | 08 Ser tRNA |
| 461695 | 461782 | + | 88 | 90960985 | Pcar_R0009 | - | 08 Ser tRNA |
| 461860 | 461883 | + | 24 | 90960985 | Pcar_R0010 | - | |
| 514641 | 514717 | - | 77 | 90960985 | Pcar_R0011 | - | 16 Met tRNA |
| 786828 | 786904 | - | 77 | 90960985 | Pcar_R0012 | - | 03 Pro tRNA |
| 834733 | 834808 | + | 76 | 90960985 | Pcar_R0013 | - | 12 Thr tRNA |
| 834855 | 834939 | + | 85 | 90960985 | Pcar_R0014 | - | 18 Tyr tRNA |
| 835063 | 835139 | + | 77 | 90960985 | Pcar_R0015 | - | 01 Gly tRNA |
| 835175 | 835250 | + | 76 | 90960985 | Pcar_R0016 | - | 12 Thr tRNA |
| 836832 | 836908 | + | 77 | 90960985 | Pcar_R0017 | - | 20 Trp tRNA |
| 882990 | 883066 | + | 77 | 90960985 | Pcar_R0018 | - | 16 Met tRNA |
| 939476 | 939551 | - | 76 | 90960985 | Pcar_R0019 | - | 12 Thr tRNA |
| 981495 | 981588 | + | 94 | 90960985 | Pcar_R0020 | - | Sec tRNA |
| 1147261 | 1147346 | - | 86 | 90960985 | Pcar_R0021 | - | 15 Leu tRNA |
| 1165075 | 1165150 | - | 76 | 90960985 | Pcar_R0022 | - | 02 Ala tRNA |
| 1168114 | 1168190 | + | 77 | 90960985 | Pcar_R0023 | - | 16 Met tRNA |
| 1544543 | 1544617 | - | 75 | 90960985 | Pcar_R0024 | - | 01 Gly tRNA |
| 1544706 | 1544780 | - | 75 | 90960985 | Pcar_R0025 | - | 01 Gly tRNA |
| 1559548 | 1559634 | + | 87 | 90960985 | Pcar_R0026 | - | 15 Leu tRNA |
| 1648307 | 1648383 | + | 77 | 90960985 | Pcar_R0027 | - | 03 Pro tRNA |
| 1648391 | 1648467 | + | 77 | 90960985 | Pcar_R0028 | - | 11 Arg tRNA |
| 1666100 | 1666174 | + | 75 | 90960985 | Pcar_R0029 | - | 13 Val tRNA |
| 1678921 | 1678997 | + | 77 | 90960985 | Pcar_R0030 | - | 11 Arg tRNA |
| 1744882 | 1744968 | + | 87 | 90960985 | Pcar_R0031 | - | 15 Leu tRNA |
| 1746454 | 1746540 | + | 87 | 90960985 | Pcar_R0032 | - | 15 Leu tRNA |
| 1748036 | 1748110 | + | 75 | 90960985 | Pcar_R0033 | - | 13 Val tRNA |
| 1837403 | 1837479 | + | 77 | 90960985 | Pcar_R0034 | - | 03 Pro tRNA |
| 1918571 | 1918645 | - | 75 | 90960985 | Pcar_R0035 | - | 01 Gly tRNA |
| 1923759 | 1923832 | - | 74 | 90960985 | Pcar_R0036 | - | 05 Gln tRNA |
| 1929459 | 1929532 | - | 74 | 90960985 | Pcar_R0037 | - | 19 Cys tRNA |
| 1967381 | 1967457 | - | 77 | 90960985 | Pcar_R0038 | - | 06 Asp tRNA |
| 1967476 | 1967551 | - | 76 | 90960985 | Pcar_R0039 | - | 13 Val tRNA |
| 1967639 | 1967715 | - | 77 | 90960985 | Pcar_R0040 | - | 06 Asp tRNA |
| 1967734 | 1967809 | - | 76 | 90960985 | Pcar_R0041 | - | 13 Val tRNA |
| 1967818 | 1967894 | - | 77 | 90960985 | Pcar_R0042 | - | 06 Asp tRNA |
| 1974135 | 1974217 | - | 83 | 90960985 | Pcar_R0043 | - | 15 Leu tRNA |
| 1974381 | 1974456 | - | 76 | 90960985 | Pcar_R0044 | - | 09 His tRNA |
| 2135011 | 2135368 | - | 358 | 90960985 | Pcar_R0045 | - | |
| 2336448 | 2336522 | - | 75 | 90960985 | Pcar_R0046 | - | 05 Gln tRNA |
| 2475643 | 2475729 | - | 87 | 90960985 | Pcar_R0047 | - | 15 Leu tRNA |
| 2746913 | 2747023 | - | 111 | 90960985 | Pcar_R0048 | - | 5S ribosomal RNA |
| 2747152 | 2750107 | - | 2956 | 90960985 | Pcar_R0049 | - | 23S ribosomal RNA |
| 2750249 | 2750324 | - | 76 | 90960985 | Pcar_R0050 | - | 02 Ala tRNA |
| 2750334 | 2750410 | - | 77 | 90960985 | Pcar_R0051 | - | 14 Ile tRNA |
| 2750635 | 2752105 | - | 1471 | 90960985 | Pcar_R0052 | - | 16S ribosomal RNA |
| 2752495 | 2752605 | - | 111 | 90960985 | Pcar_R0053 | - | 5S ribosomal RNA |
| 2752734 | 2755689 | - | 2956 | 90960985 | Pcar_R0054 | - | 23S ribosomal RNA |
| 2755831 | 2755906 | - | 76 | 90960985 | Pcar_R0055 | - | 02 Ala tRNA |
| 2755916 | 2755992 | - | 77 | 90960985 | Pcar_R0056 | - | 14 Ile tRNA |
| 2756217 | 2757687 | - | 1471 | 90960985 | Pcar_R0057 | - | 16S ribosomal RNA |
| 2997845 | 2997921 | + | 77 | 90960985 | Pcar_R0058 | - | 11 Arg tRNA |
| 3126815 | 3127144 | - | 330 | 90960985 | Pcar_R0059 | - | |
| 3129309 | 3129384 | - | 76 | 90960985 | Pcar_R0060 | - | 16 Met tRNA |
| 3317316 | 3317388 | - | 73 | 90960985 | Pcar_R0061 | - | 15 Leu tRNA |
| 3437068 | 3437143 | - | 76 | 90960985 | Pcar_R0062 | - | 07 Asn tRNA |
| 3627395 | 3627470 | - | 76 | 90960985 | Pcar_R0063 | - | 17 Phe tRNA |

