Геном прокариот/Материалы:NC 007512
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LOCUS NC_007512 2364842 bp DNA circular BCT 31-MAR-2006
DEFINITION Pelodictyon luteolum DSM 273, complete genome.
ACCESSION NC_007512
VERSION NC_007512.1 GI:78185892
KEYWORDS .
SOURCE Pelodictyon luteolum DSM 273
ORGANISM Pelodictyon luteolum DSM 273
Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae;
Chlorobium/Pelodictyon group; Pelodictyon.
REFERENCE 1 (bases 1 to 2364842)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Bryant,D.,
Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Pelodictyon luteolum DSM 273
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2364842)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (27-OCT-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2364842)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Bryant,D.,
Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P.
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000096.
URL -- http://www.jgi.doe.gov
Source DNA available from Don Bryant (dab14@psu.edu)
Bacteria available from DSMZ: DSM 273
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done at Penn State University
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 27006 | 27078 | - | 73 | 78185892 | Plut_R0048 | - | 12 Thr tRNA |
| 82719 | 82792 | + | 74 | 78185892 | Plut_R0001 | - | 13 Val tRNA |
| 107760 | 109122 | + | 1363 | 78185892 | Plut_R0049 | - | 16S ribosomal RNA |
| 109367 | 109443 | + | 77 | 78185892 | Plut_R0002 | - | 14 Ile tRNA |
| 109483 | 109558 | + | 76 | 78185892 | Plut_R0003 | - | 02 Ala tRNA |
| 109699 | 112448 | + | 2750 | 78185892 | Plut_R0050 | - | 23S ribosomal RNA |
| 112721 | 112830 | + | 110 | 78185892 | Plut_R0051 | - | 5S ribosomal RNA |
| 116732 | 118095 | + | 1364 | 78185892 | Plut_R0052 | - | 16S ribosomal RNA |
| 118340 | 118416 | + | 77 | 78185892 | Plut_R0004 | - | 14 Ile tRNA |
| 118456 | 118531 | + | 76 | 78185892 | Plut_R0005 | - | 02 Ala tRNA |
| 118672 | 121421 | + | 2750 | 78185892 | Plut_R0053 | - | 23S ribosomal RNA |
| 121694 | 121803 | + | 110 | 78185892 | Plut_R0054 | - | 5S ribosomal RNA |
| 148563 | 148637 | - | 75 | 78185892 | Plut_R0047 | - | 07 Asn tRNA |
| 193418 | 193490 | + | 73 | 78185892 | Plut_R0006 | - | 01 Gly tRNA |
| 345943 | 346020 | - | 78 | 78185892 | Plut_R0046 | - | 06 Asp tRNA |
| 503406 | 503481 | - | 76 | 78185892 | Plut_R0045 | - | 02 Ala tRNA |
| 595182 | 595255 | + | 74 | 78185892 | Plut_R0007 | - | 13 Val tRNA |
| 623735 | 623821 | - | 87 | 78185892 | Plut_R0044 | - | 08 Ser tRNA |
| 625153 | 625228 | - | 76 | 78185892 | Plut_R0043 | - | 01 Gly tRNA |
| 655439 | 655511 | - | 73 | 78185892 | Plut_R0042 | - | 05 Gln tRNA |
| 656539 | 656615 | - | 77 | 78185892 | Plut_R0041 | - | 11 Arg tRNA |
| 656666 | 656739 | - | 74 | 78185892 | Plut_R0040 | - | 04 Glu tRNA |
| 656769 | 656842 | - | 74 | 78185892 | Plut_R0039 | - | 16 Met tRNA |
| 690039 | 690115 | - | 77 | 78185892 | Plut_R0038 | - | 10 Lys tRNA |
| 773759 | 773833 | + | 75 | 78185892 | Plut_R0008 | - | 05 Gln tRNA |
| 826324 | 826396 | + | 73 | 78185892 | Plut_R0009 | - | 03 Pro tRNA |
| 826422 | 826497 | + | 76 | 78185892 | Plut_R0010 | - | 11 Arg tRNA |
| 826529 | 826604 | + | 76 | 78185892 | Plut_R0011 | - | 09 His tRNA |
| 826613 | 826684 | + | 72 | 78185892 | Plut_R0012 | - | 04 Glu tRNA |
| 834840 | 834914 | + | 75 | 78185892 | Plut_R0013 | - | 10 Lys tRNA |
| 852974 | 853060 | - | 87 | 78185892 | Plut_R0037 | - | 15 Leu tRNA |
| 853071 | 853155 | - | 85 | 78185892 | Plut_R0036 | - | 15 Leu tRNA |
| 908983 | 909069 | + | 87 | 78185892 | Plut_R0014 | - | 08 Ser tRNA |
| 909159 | 909244 | + | 86 | 78185892 | Plut_R0015 | - | 08 Ser tRNA |
| 909256 | 909348 | + | 93 | 78185892 | Plut_R0016 | - | 08 Ser tRNA |
| 1029358 | 1029434 | - | 77 | 78185892 | Plut_R0035 | - | 13 Val tRNA |
| 1105965 | 1106038 | - | 74 | 78185892 | Plut_R0034 | - | 19 Cys tRNA |
| 1345016 | 1345091 | - | 76 | 78185892 | Plut_R0033 | - | 16 Met tRNA |
| 1450838 | 1450910 | - | 73 | 78185892 | Plut_R0032 | - | 03 Pro tRNA |
| 1450926 | 1450998 | - | 73 | 78185892 | Plut_R0031 | - | 11 Arg tRNA |
| 1489391 | 1489467 | + | 77 | 78185892 | Plut_R0017 | - | 16 Met tRNA |
| 1491943 | 1492018 | + | 76 | 78185892 | Plut_R0018 | - | 01 Gly tRNA |
| 1525362 | 1525446 | + | 85 | 78185892 | Plut_R0019 | - | 15 Leu tRNA |
| 1928051 | 1928123 | - | 73 | 78185892 | Plut_R0030 | - | 17 Phe tRNA |
| 1965126 | 1965207 | - | 82 | 78185892 | Plut_R0029 | - | 15 Leu tRNA |
| 1965241 | 1965316 | - | 76 | 78185892 | Plut_R0028 | - | 10 Lys tRNA |
| 2142997 | 2143085 | + | 89 | 78185892 | Plut_R0020 | - | 15 Leu tRNA |
| 2158066 | 2158139 | - | 74 | 78185892 | Plut_R0027 | - | 03 Pro tRNA |
| 2191048 | 2191120 | - | 73 | 78185892 | Plut_R0026 | - | 20 Trp tRNA |
| 2191138 | 2191213 | - | 76 | 78185892 | Plut_R0025 | - | 12 Thr tRNA |
| 2191238 | 2191320 | - | 83 | 78185892 | Plut_R0024 | - | 18 Tyr tRNA |
| 2191333 | 2191405 | - | 73 | 78185892 | Plut_R0023 | - | 12 Thr tRNA |
| 2205241 | 2205313 | - | 73 | 78185892 | Plut_R0022 | - | 11 Arg tRNA |
| 2327937 | 2328009 | - | 73 | 78185892 | Plut_R0021 | - | 02 Ala tRNA |

