Геном прокариот/Материалы:NC 007513
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_007513 2234828 bp DNA circular BCT 16-JUN-2006
DEFINITION Synechococcus sp. CC9902, complete genome.
ACCESSION NC_007513
VERSION NC_007513.1 GI:78183584
KEYWORDS .
SOURCE Synechococcus sp. CC9902
ORGANISM Synechococcus sp. CC9902
Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
REFERENCE 1 (bases 1 to 2234828)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Martinez,M.,
Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Synechococcus sp. CC9902
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2234828)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (27-OCT-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2234828)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Martinez,M.,
Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000097.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Brian Palenik
(bpalenik@ucsd.edu)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-PGF
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 22650 | 22731 | + | 82 | 78183584 | Syncc9902_R0001 | - | 15 Leu tRNA |
| 123414 | 123485 | - | 72 | 78183584 | Syncc9902_R0045 | - | 13 Val tRNA |
| 169581 | 169651 | + | 71 | 78183584 | Syncc9902_R0002 | - | 01 Gly tRNA |
| 182872 | 182944 | - | 73 | 78183584 | Syncc9902_R0044 | - | 12 Thr tRNA |
| 354501 | 354573 | - | 73 | 78183584 | Syncc9902_R0043 | - | 04 Glu tRNA |
| 373319 | 374797 | + | 1479 | 78183584 | Syncc9902_R0046 | - | 16S ribosomal RNA |
| 375574 | 378439 | + | 2866 | 78183584 | Syncc9902_R0047 | - | 23S ribosomal RNA |
| 378570 | 378660 | + | 91 | 78183584 | Syncc9902_R0048 | - | 5S ribosomal RNA |
| 430170 | 430246 | + | 77 | 78183584 | Syncc9902_R0003 | - | 16 Met tRNA |
| 478028 | 478113 | - | 86 | 78183584 | Syncc9902_R0042 | - | 15 Leu tRNA |
| 634879 | 634968 | + | 90 | 78183584 | Syncc9902_R0004 | - | 08 Ser tRNA |
| 702893 | 702966 | - | 74 | 78183584 | Syncc9902_R0041 | - | 16 Met tRNA |
| 751601 | 751687 | + | 87 | 78183584 | Syncc9902_R0005 | - | 08 Ser tRNA |
| 857767 | 857840 | + | 74 | 78183584 | Syncc9902_R0006 | - | 03 Pro tRNA |
| 978245 | 978316 | + | 72 | 78183584 | Syncc9902_R0007 | - | 10 Lys tRNA |
| 979674 | 979747 | + | 74 | 78183584 | Syncc9902_R0008 | - | 03 Pro tRNA |
| 1015386 | 1015459 | - | 74 | 78183584 | Syncc9902_R0040 | - | Xaa tRNA |
| 1020071 | 1020146 | - | 76 | 78183584 | Syncc9902_R0039 | - | 02 Ala tRNA |
| 1069388 | 1069474 | - | 87 | 78183584 | Syncc9902_R0038 | - | 15 Leu tRNA |
| 1070986 | 1071067 | + | 82 | 78183584 | Syncc9902_R0009 | - | 15 Leu tRNA |
| 1077198 | 1077270 | + | 73 | 78183584 | Syncc9902_R0010 | - | 09 His tRNA |
| 1096080 | 1096166 | - | 87 | 78183584 | Syncc9902_R0037 | - | 08 Ser tRNA |
| 1242820 | 1242892 | + | 73 | 78183584 | Syncc9902_R0011 | - | 20 Trp tRNA |
| 1243384 | 1243457 | + | 74 | 78183584 | Syncc9902_R0012 | - | 06 Asp tRNA |
| 1258175 | 1258246 | + | 72 | 78183584 | Syncc9902_R0013 | - | 13 Val tRNA |
| 1313717 | 1313790 | + | 74 | 78183584 | Syncc9902_R0014 | - | 11 Arg tRNA |
| 1345600 | 1345684 | + | 85 | 78183584 | Syncc9902_R0015 | - | 18 Tyr tRNA |
| 1345692 | 1345763 | + | 72 | 78183584 | Syncc9902_R0016 | - | 12 Thr tRNA |
| 1364203 | 1364275 | - | 73 | 78183584 | Syncc9902_R0036 | - | 02 Ala tRNA |
| 1364285 | 1364358 | - | 74 | 78183584 | Syncc9902_R0035 | - | 14 Ile tRNA |
| 1374141 | 1374212 | + | 72 | 78183584 | Syncc9902_R0017 | - | 12 Thr tRNA |
| 1388393 | 1388465 | + | 73 | 78183584 | Syncc9902_R0018 | - | 17 Phe tRNA |
| 1422342 | 1422412 | - | 71 | 78183584 | Syncc9902_R0034 | - | 19 Cys tRNA |
| 1438223 | 1438296 | - | 74 | 78183584 | Syncc9902_R0033 | - | 11 Arg tRNA |
| 1453151 | 1453222 | - | 72 | 78183584 | Syncc9902_R0032 | - | 05 Gln tRNA |
| 1475004 | 1475092 | + | 89 | 78183584 | Syncc9902_R0019 | - | 08 Ser tRNA |
| 1505178 | 1505251 | - | 74 | 78183584 | Syncc9902_R0031 | - | 03 Pro tRNA |
| 1544208 | 1544280 | + | 73 | 78183584 | Syncc9902_R0020 | - | 02 Ala tRNA |
| 1552975 | 1553056 | - | 82 | 78183584 | Syncc9902_R0030 | - | 15 Leu tRNA |
| 1586069 | 1586142 | - | 74 | 78183584 | Syncc9902_R0029 | - | 11 Arg tRNA |
| 1722181 | 1722252 | - | 72 | 78183584 | Syncc9902_R0028 | - | 13 Val tRNA |
| 1773409 | 1773521 | - | 113 | 78183584 | Syncc9902_R0049 | - | 5S ribosomal RNA |
| 1773630 | 1776495 | - | 2866 | 78183584 | Syncc9902_R0050 | - | 23S ribosomal RNA |
| 1777273 | 1778730 | - | 1458 | 78183584 | Syncc9902_R0051 | - | 16S ribosomal RNA |
| 1859594 | 1859665 | - | 72 | 78183584 | Syncc9902_R0027 | - | 01 Gly tRNA |
| 1904889 | 1904960 | - | 72 | 78183584 | Syncc9902_R0026 | - | 01 Gly tRNA |
| 2008094 | 2008170 | + | 77 | 78183584 | Syncc9902_R0021 | - | 11 Arg tRNA |
| 2095973 | 2096045 | + | 73 | 78183584 | Syncc9902_R0022 | - | 16 Met tRNA |
| 2148696 | 2148767 | - | 72 | 78183584 | Syncc9902_R0025 | - | 07 Asn tRNA |
| 2197081 | 2197154 | + | 74 | 78183584 | Syncc9902_R0023 | - | 14 Ile tRNA |
| 2197164 | 2197236 | + | 73 | 78183584 | Syncc9902_R0024 | - | 02 Ala tRNA |

