Геном прокариот/Материалы:NC 007577
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LOCUS NC_007577 1709204 bp DNA circular BCT 16-JUN-2006
DEFINITION Prochlorococcus marinus str. MIT 9312, complete genome.
ACCESSION NC_007577
VERSION NC_007577.1 GI:78778385
KEYWORDS .
SOURCE Prochlorococcus marinus str. MIT 9312
ORGANISM Prochlorococcus marinus str. MIT 9312
Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae;
Prochlorococcus.
REFERENCE 1 (bases 1 to 1709204)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Thiel,J., Schmutz,J.,
Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Prochlorococcus marinus str. MIT 9312
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1709204)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1709204)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Thiel,J., Schmutz,J.,
Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000111.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Sallie Chisholm
(chisholm@mit.edu)
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 58087 | 58337 | - | 251 | 78778385 | PMT9312_R0001 | - | tmRNA |
| 67209 | 67290 | - | 82 | 78778385 | PMT9312_R0002 | - | 15 Leu tRNA |
| 124451 | 124522 | + | 72 | 78778385 | PMT9312_R0003 | - | 07 Asn tRNA |
| 230241 | 230322 | + | 82 | 78778385 | PMT9312_R0004 | - | 15 Leu tRNA |
| 249759 | 249832 | - | 74 | 78778385 | PMT9312_R0005 | - | 11 Arg tRNA |
| 264902 | 264974 | - | 73 | 78778385 | PMT9312_R0006 | - | 16 Met tRNA |
| 300889 | 300964 | - | 76 | 78778385 | PMT9312_R0007 | - | 17 Phe tRNA |
| 309600 | 309671 | - | 72 | 78778385 | PMT9312_R0008 | - | 12 Thr tRNA |
| 317580 | 319044 | + | 1465 | 78778385 | PMT9312_R0009 | - | 16S ribosomal RNA |
| 319170 | 319243 | + | 74 | 78778385 | PMT9312_R0010 | - | 14 Ile tRNA |
| 319256 | 319328 | + | 73 | 78778385 | PMT9312_R0011 | - | 02 Ala tRNA |
| 319585 | 322458 | + | 2874 | 78778385 | PMT9312_R0012 | - | 23S ribosomal RNA |
| 322525 | 322638 | + | 114 | 78778385 | PMT9312_R0013 | - | 5S ribosomal RNA |
| 365504 | 365575 | - | 72 | 78778385 | PMT9312_R0014 | - | 12 Thr tRNA |
| 365586 | 365667 | - | 82 | 78778385 | PMT9312_R0015 | - | 18 Tyr tRNA |
| 445827 | 445900 | - | 74 | 78778385 | PMT9312_R0016 | - | 06 Asp tRNA |
| 446279 | 446351 | - | 73 | 78778385 | PMT9312_R0017 | - | 20 Trp tRNA |
| 532723 | 532808 | + | 86 | 78778385 | PMT9312_R0018 | - | 15 Leu tRNA |
| 620639 | 620725 | - | 87 | 78778385 | PMT9312_R0019 | - | 08 Ser tRNA |
| 780231 | 780307 | - | 77 | 78778385 | PMT9312_R0020 | - | 03 Pro tRNA |
| 833252 | 833338 | + | 87 | 78778385 | PMT9312_R0021 | - | 08 Ser tRNA |
| 874026 | 874099 | + | 74 | 78778385 | PMT9312_R0022 | - | 16 Met tRNA |
| 914319 | 914395 | + | 77 | 78778385 | PMT9312_R0023 | - | 16 Met tRNA |
| 999489 | 999561 | - | 73 | 78778385 | PMT9312_R0024 | - | 04 Glu tRNA |
| 1043185 | 1043256 | + | 72 | 78778385 | PMT9312_R0025 | - | 10 Lys tRNA |
| 1052661 | 1052737 | + | 77 | 78778385 | PMT9312_R0026 | - | 03 Pro tRNA |
| 1075970 | 1076040 | + | 71 | 78778385 | PMT9312_R0027 | - | Xaa tRNA |
| 1173755 | 1173839 | - | 85 | 78778385 | PMT9312_R0028 | - | 08 Ser tRNA |
| 1203666 | 1203739 | + | 74 | 78778385 | PMT9312_R0029 | - | 11 Arg tRNA |
| 1258197 | 1258272 | + | 76 | 78778385 | PMT9312_R0030 | - | 02 Ala tRNA |
| 1259082 | 1259150 | + | 69 | 78778385 | PMT9312_R0031 | - | Xaa tRNA |
| 1312364 | 1312445 | + | 82 | 78778385 | PMT9312_R0032 | - | 15 Leu tRNA |
| 1317625 | 1317697 | + | 73 | 78778385 | PMT9312_R0033 | - | 09 His tRNA |
| 1322690 | 1322791 | - | 102 | 78778385 | PMT9312_R0034 | - | SRP RNA |
| 1334795 | 1334865 | - | 71 | 78778385 | PMT9312_R0035 | - | 01 Gly tRNA |
| 1366383 | 1366454 | + | 72 | 78778385 | PMT9312_R0036 | - | 13 Val tRNA |
| 1486163 | 1486234 | + | 72 | 78778385 | PMT9312_R0037 | - | 12 Thr tRNA |
| 1520737 | 1520825 | - | 89 | 78778385 | PMT9312_R0038 | - | 08 Ser tRNA |
| 1540668 | 1540739 | + | 72 | 78778385 | PMT9312_R0039 | - | 05 Gln tRNA |
| 1553369 | 1553442 | + | 74 | 78778385 | PMT9312_R0040 | - | 11 Arg tRNA |
| 1568001 | 1568071 | + | 71 | 78778385 | PMT9312_R0041 | - | 19 Cys tRNA |
| 1585608 | 1585681 | - | 74 | 78778385 | PMT9312_R0042 | - | 11 Arg tRNA |
| 1585779 | 1586083 | + | 305 | 78778385 | PMT9312_R0043 | - | RNA component of RNaseP |
| 1622062 | 1622133 | - | 72 | 78778385 | PMT9312_R0044 | - | 01 Gly tRNA |
| 1668616 | 1668687 | - | 72 | 78778385 | PMT9312_R0045 | - | 13 Val tRNA |

