Геном прокариот/Материалы:NC 007604
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LOCUS NC_007604 2695903 bp DNA circular BCT 08-JUN-2007
DEFINITION Synechococcus elongatus PCC 7942, complete genome.
ACCESSION NC_007604
VERSION NC_007604.1 GI:81298811
KEYWORDS .
SOURCE Synechococcus elongatus PCC 7942
ORGANISM Synechococcus elongatus PCC 7942
Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
REFERENCE 1 (bases 1 to 2695903)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome 1 of Synechococcus elongatus PCC
7942
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2695903)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2695903)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
Larimer,F., Land,M., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000100.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Susan Golden
(sgolden@tamu.edu)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-PGF
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 87725 | 87796 | - | 72 | 81298811 | Synpcc7942_R0025 | - | 07 Asn tRNA |
| 121282 | 121352 | + | 71 | 81298811 | Synpcc7942_R0026 | - | 19 Cys tRNA |
| 123940 | 124013 | + | 74 | 81298811 | Synpcc7942_R0027 | - | 19 Cys tRNA |
| 166532 | 166608 | + | 77 | 81298811 | Synpcc7942_R0028 | - | 16 Met tRNA |
| 219927 | 220000 | + | 74 | 81298811 | Synpcc7942_R0029 | - | 03 Pro tRNA |
| 288160 | 288232 | - | 73 | 81298811 | Synpcc7942_R0030 | - | 02 Ala tRNA |
| 424911 | 424984 | - | 74 | 81298811 | Synpcc7942_R0031 | - | 11 Arg tRNA |
| 555218 | 555288 | + | 71 | 81298811 | Synpcc7942_R0032 | - | 01 Gly tRNA |
| 568589 | 570078 | + | 1490 | 81298811 | Synpcc7942_R0004 | - | 16S ribosomal RNA |
| 570240 | 570316 | + | 77 | 81298811 | Synpcc7942_R0033 | - | 14 Ile tRNA |
| 570347 | 570422 | + | 76 | 81298811 | Synpcc7942_R0034 | - | 02 Ala tRNA |
| 570624 | 573501 | + | 2878 | 81298811 | Synpcc7942_R0005 | - | 23S ribosomal RNA |
| 573572 | 573686 | + | 115 | 81298811 | Synpcc7942_R0006 | - | 5S ribosomal RNA |
| 587716 | 587787 | + | 72 | 81298811 | Synpcc7942_R0035 | - | 16 Met tRNA |
| 620372 | 620443 | + | 72 | 81298811 | Synpcc7942_R0037 | - | 05 Gln tRNA |
| 673441 | 673512 | + | 72 | 81298811 | Synpcc7942_R0038 | - | 13 Val tRNA |
| 709609 | 709692 | - | 84 | 81298811 | Synpcc7942_R0039 | - | 15 Leu tRNA |
| 711226 | 711312 | + | 87 | 81298811 | Synpcc7942_R0040 | - | 15 Leu tRNA |
| 908331 | 908402 | + | 72 | 81298811 | Synpcc7942_R0041 | - | 12 Thr tRNA |
| 923151 | 923235 | + | 85 | 81298811 | Synpcc7942_R0042 | - | 18 Tyr tRNA |
| 923243 | 923317 | + | 75 | 81298811 | Synpcc7942_R0043 | - | 12 Thr tRNA |
| 989340 | 989730 | - | 391 | 81298811 | Synpcc7942_R0017 | - | tmRNA |
| 1170702 | 1170775 | - | 74 | 81298811 | Synpcc7942_R0044 | - | 03 Pro tRNA |
| 1174969 | 1175042 | + | 74 | 81298811 | Synpcc7942_R0045 | - | 03 Pro tRNA |
| 1248477 | 1248551 | - | 75 | 81298811 | Synpcc7942_R0046 | - | 13 Val tRNA |
| 1421238 | 1421319 | - | 82 | 81298811 | Synpcc7942_R0048 | - | 15 Leu tRNA |
| 1496904 | 1496975 | + | 72 | 81298811 | Synpcc7942_R0049 | - | 10 Lys tRNA |
| 1557246 | 1557317 | + | 72 | 81298811 | Synpcc7942_R0053 | - | 13 Val tRNA |
| 1622798 | 1622869 | - | 72 | 81298811 | Synpcc7942_R0001 | - | 01 Gly tRNA |
| 1712986 | 1713297 | + | 312 | 81298811 | Synpcc7942_R0036 | - | RNA component of RNaseP |
| 2025281 | 2025365 | + | 85 | 81298811 | Synpcc7942_R0002 | - | 08 Ser tRNA |
| 2085452 | 2085523 | - | 72 | 81298811 | Synpcc7942_R0003 | - | 12 Thr tRNA |
| 2196083 | 2196155 | + | 73 | 81298811 | Synpcc7942_R0007 | - | 04 Glu tRNA |
| 2281200 | 2281288 | - | 89 | 81298811 | Synpcc7942_R0008 | - | 08 Ser tRNA |
| 2309655 | 2309726 | - | 72 | 81298811 | Synpcc7942_R0009 | - | 01 Gly tRNA |
| 2318309 | 2318381 | + | 73 | 81298811 | Synpcc7942_R0010 | - | 11 Arg tRNA |
| 2343582 | 2343657 | + | 76 | 81298811 | Synpcc7942_R0011 | - | 11 Arg tRNA |
| 2379460 | 2379533 | - | 74 | 81298811 | Synpcc7942_R0012 | - | 11 Arg tRNA |
| 2433493 | 2433568 | + | 76 | 81298811 | Synpcc7942_R0013 | - | 09 His tRNA |
| 2447896 | 2447996 | - | 101 | 81298811 | Synpcc7942_R0047 | - | SRP RNA |
| 2478513 | 2478585 | + | 73 | 81298811 | Synpcc7942_R0014 | - | 17 Phe tRNA |
| 2513976 | 2514057 | + | 82 | 81298811 | Synpcc7942_R0015 | - | 15 Leu tRNA |
| 2538396 | 2538482 | + | 87 | 81298811 | Synpcc7942_R0016 | - | 08 Ser tRNA |
| 2596584 | 2596656 | + | 73 | 81298811 | Synpcc7942_R0018 | - | 02 Ala tRNA |
| 2622812 | 2622884 | + | 73 | 81298811 | Synpcc7942_R0019 | - | 20 Trp tRNA |
| 2623091 | 2623164 | + | 74 | 81298811 | Synpcc7942_R0020 | - | 06 Asp tRNA |
| 2655235 | 2655349 | - | 115 | 81298811 | Synpcc7942_R0050 | - | 5S ribosomal RNA |
| 2655420 | 2658297 | - | 2878 | 81298811 | Synpcc7942_R0051 | - | 23S ribosomal RNA |
| 2658499 | 2658574 | - | 76 | 81298811 | Synpcc7942_R0021 | - | 02 Ala tRNA |
| 2658605 | 2658681 | - | 77 | 81298811 | Synpcc7942_R0022 | - | 14 Ile tRNA |
| 2658843 | 2660332 | - | 1490 | 81298811 | Synpcc7942_R0052 | - | 16S ribosomal RNA |
| 2666838 | 2666924 | - | 87 | 81298811 | Synpcc7942_R0023 | - | 08 Ser tRNA |
| 2676606 | 2676678 | - | 73 | 81298811 | Synpcc7942_R0024 | - | 16 Met tRNA |

