Геном прокариот/Материалы:NC 007614
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_007614 3184243 bp DNA circular BCT 31-MAR-2006
DEFINITION Nitrosospira multiformis ATCC 25196 chromosome 1, complete
sequence.
ACCESSION NC_007614
VERSION NC_007614.1 GI:82701135
KEYWORDS .
SOURCE Nitrosospira multiformis ATCC 25196
ORGANISM Nitrosospira multiformis ATCC 25196
Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
Nitrosomonadaceae; Nitrosospira.
REFERENCE 1 (bases 1 to 3184243)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome 1 of Nitrosospira multiformis ATCC
25196
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3184243)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-NOV-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3184243)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000103.
URL -- http://www.jgi.doe.gov
Source DNA available from Dan Arp (arpd@bcc.orst.edu)
Bacteria available from ATCC: ATCC 25196
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LLNL
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 27371 | 27446 | + | 76 | 82701135 | Nmul_AR0001 | - | 11 Arg tRNA |
| 80715 | 80788 | + | 74 | 82701135 | Nmul_AR0002 | - | 01 Gly tRNA |
| 142086 | 142161 | + | 76 | 82701135 | Nmul_AR0003 | - | 02 Ala tRNA |
| 155336 | 155411 | + | 76 | 82701135 | Nmul_AR0004 | - | 10 Lys tRNA |
| 218904 | 218980 | - | 77 | 82701135 | Nmul_AR0005 | - | 11 Arg tRNA |
| 241013 | 241249 | - | 237 | 82701135 | Nmul_AR0006 | - | RNA component of RNaseP |
| 253129 | 253205 | + | 77 | 82701135 | Nmul_AR0007 | - | 03 Pro tRNA |
| 253241 | 253317 | + | 77 | 82701135 | Nmul_AR0008 | - | 11 Arg tRNA |
| 253378 | 253452 | + | 75 | 82701135 | Nmul_AR0009 | - | 09 His tRNA |
| 285113 | 285189 | - | 77 | 82701135 | Nmul_AR0010 | - | 13 Val tRNA |
| 553914 | 553990 | + | 77 | 82701135 | Nmul_AR0011 | - | 03 Pro tRNA |
| 562629 | 564157 | + | 1529 | 82701135 | Nmul_AR0012 | - | 16S ribosomal RNA |
| 564282 | 564358 | + | 77 | 82701135 | Nmul_AR0013 | - | 14 Ile tRNA |
| 564366 | 564441 | + | 76 | 82701135 | Nmul_AR0014 | - | 02 Ala tRNA |
| 564814 | 567702 | + | 2889 | 82701135 | Nmul_AR0015 | - | 23S ribosomal RNA |
| 567825 | 567942 | + | 118 | 82701135 | Nmul_AR0016 | - | 5S ribosomal RNA |
| 673637 | 673711 | + | 75 | 82701135 | Nmul_AR0017 | - | 05 Gln tRNA |
| 874636 | 874720 | + | 85 | 82701135 | Nmul_AR0018 | - | 18 Tyr tRNA |
| 874898 | 874971 | + | 74 | 82701135 | Nmul_AR0019 | - | 01 Gly tRNA |
| 875060 | 875134 | + | 75 | 82701135 | Nmul_AR0020 | - | 12 Thr tRNA |
| 876463 | 876538 | + | 76 | 82701135 | Nmul_AR0021 | - | 20 Trp tRNA |
| 1082394 | 1082485 | - | 92 | 82701135 | Nmul_AR0022 | - | 08 Ser tRNA |
| 1162686 | 1162761 | - | 76 | 82701135 | Nmul_AR0023 | - | 12 Thr tRNA |
| 1257731 | 1257815 | + | 85 | 82701135 | Nmul_AR0024 | - | 15 Leu tRNA |
| 1464533 | 1464607 | + | 75 | 82701135 | Nmul_AR0025 | - | 01 Gly tRNA |
| 1464755 | 1464828 | + | 74 | 82701135 | Nmul_AR0026 | - | 19 Cys tRNA |
| 1488892 | 1488980 | + | 89 | 82701135 | Nmul_AR0027 | - | 15 Leu tRNA |
| 1838011 | 1838086 | - | 76 | 82701135 | Nmul_AR0028 | - | 04 Glu tRNA |
| 1838145 | 1838220 | - | 76 | 82701135 | Nmul_AR0029 | - | 02 Ala tRNA |
| 1840080 | 1840154 | + | 75 | 82701135 | Nmul_AR0030 | - | 13 Val tRNA |
| 1935662 | 1935737 | - | 76 | 82701135 | Nmul_AR0031 | - | 07 Asn tRNA |
| 2074756 | 2074832 | - | 77 | 82701135 | Nmul_AR0032 | - | 03 Pro tRNA |
| 2142335 | 2142438 | - | 104 | 82701135 | Nmul_AR0033 | - | 4.5S ribosomal RNA component of signal recognition particle (SRP) |
| 2144593 | 2144669 | - | 77 | 82701135 | Nmul_AR0034 | - | 16 Met tRNA |
| 2232983 | 2233075 | - | 93 | 82701135 | Nmul_AR0035 | - | 08 Ser tRNA |
| 2244919 | 2245005 | + | 87 | 82701135 | Nmul_AR0036 | - | 15 Leu tRNA |
| 2261847 | 2261923 | + | 77 | 82701135 | Nmul_AR0037 | - | 11 Arg tRNA |
| 2348630 | 2348706 | - | 77 | 82701135 | Nmul_AR0038 | - | 16 Met tRNA |
| 2480674 | 2481035 | - | 362 | 82701135 | Nmul_AR0039 | - | tmRNA |
| 2514714 | 2514801 | - | 88 | 82701135 | Nmul_AR0040 | - | 08 Ser tRNA |
| 2628672 | 2628764 | - | 93 | 82701135 | Nmul_AR0041 | - | 08 Ser tRNA |
| 2662578 | 2662654 | - | 77 | 82701135 | Nmul_AR0042 | - | 06 Asp tRNA |
| 2662667 | 2662742 | - | 76 | 82701135 | Nmul_AR0043 | - | 13 Val tRNA |
| 2669090 | 2669174 | - | 85 | 82701135 | Nmul_AR0044 | - | 15 Leu tRNA |
| 2769529 | 2769615 | + | 87 | 82701135 | Nmul_AR0045 | - | 15 Leu tRNA |
| 2791773 | 2791848 | - | 76 | 82701135 | Nmul_AR0046 | - | 16 Met tRNA |
| 3043258 | 3043333 | - | 76 | 82701135 | Nmul_AR0047 | - | 17 Phe tRNA |
| 3123890 | 3123965 | + | 76 | 82701135 | Nmul_AR0048 | - | 10 Lys tRNA |
| 3157579 | 3157654 | + | 76 | 82701135 | Nmul_AR0049 | - | 12 Thr tRNA |

