Геном прокариот/Материалы:NC 007760
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LOCUS NC_007760 5013479 bp DNA circular BCT 31-MAR-2006
DEFINITION Anaeromyxobacter dehalogenans 2CP-C, complete genome.
ACCESSION NC_007760
VERSION NC_007760.1 GI:86156430
KEYWORDS .
SOURCE Anaeromyxobacter dehalogenans 2CP-C
ORGANISM Anaeromyxobacter dehalogenans 2CP-C
Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales;
Cystobacterineae; Myxococcaceae; Anaeromyxobacter.
REFERENCE 1 (bases 1 to 5013479)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F.,
Land,M., Kyrpides,N., Anderson,I., Sanford,R.A., Ritalahti,K.M.,
Thomas,H.S., Kirby,J.R., Zhulin,I.B., Loeffler,F.E. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Anaeromyxobacter dehalogenans 2CP-C
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5013479)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-JAN-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5013479)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D.,
Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F.,
Land,M., Kyrpides,N., Anderson,I., Sanford,R.A., Ritalahti,K.M.,
Thomas,H.S., Kirby,J.R., Zhulin,I.B., Loeffler,F.E. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000251.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Frank Loeffler
(frank.loeffler@ce.gatech.edu)
Contact: Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 7820 | 7893 | + | 74 | 86156430 | Adeh_R0001 | - | 05 Gln tRNA |
| 20677 | 20749 | + | 73 | 86156430 | Adeh_R0002 | - | 17 Phe tRNA |
| 415485 | 415560 | - | 76 | 86156430 | Adeh_R0003 | - | 01 Gly tRNA |
| 657535 | 657611 | - | 77 | 86156430 | Adeh_R0004 | - | 06 Asp tRNA |
| 657618 | 657692 | - | 75 | 86156430 | Adeh_R0005 | - | 13 Val tRNA |
| 684121 | 684204 | - | 84 | 86156430 | Adeh_R0006 | - | 15 Leu tRNA |
| 837154 | 837226 | + | 73 | 86156430 | Adeh_R0007 | - | 16 Met tRNA |
| 1026365 | 1026440 | - | 76 | 86156430 | Adeh_R0008 | - | 02 Ala tRNA |
| 1196871 | 1196944 | - | 74 | 86156430 | Adeh_R0009 | - | 03 Pro tRNA |
| 1331625 | 1331696 | + | 72 | 86156430 | Adeh_R0010 | - | 19 Cys tRNA |
| 1361322 | 1362863 | + | 1542 | 86156430 | Adeh_R0011 | - | 16S ribosomal RNA |
| 1363057 | 1363134 | + | 78 | 86156430 | Adeh_R0012 | - | 14 Ile tRNA |
| 1363154 | 1363229 | + | 76 | 86156430 | Adeh_R0013 | - | 02 Ala tRNA |
| 1363429 | 1366413 | + | 2985 | 86156430 | Adeh_R0014 | - | 23S ribosomal RNA |
| 1366555 | 1366671 | + | 117 | 86156430 | Adeh_R0015 | - | 5S ribosomal RNA |
| 1406598 | 1406673 | - | 76 | 86156430 | Adeh_R0016 | - | 07 Asn tRNA |
| 1684596 | 1684672 | + | 77 | 86156430 | Adeh_R0017 | - | 11 Arg tRNA |
| 1758984 | 1759065 | - | 82 | 86156430 | Adeh_R0018 | - | 15 Leu tRNA |
| 1786250 | 1786333 | - | 84 | 86156430 | Adeh_R0019 | - | 15 Leu tRNA |
| 1813945 | 1814017 | + | 73 | 86156430 | Adeh_R0020 | - | 12 Thr tRNA |
| 1814064 | 1814146 | + | 83 | 86156430 | Adeh_R0021 | - | 18 Tyr tRNA |
| 1814211 | 1814286 | + | 76 | 86156430 | Adeh_R0022 | - | 01 Gly tRNA |
| 1814309 | 1814381 | + | 73 | 86156430 | Adeh_R0023 | - | 12 Thr tRNA |
| 1815825 | 1815900 | + | 76 | 86156430 | Adeh_R0024 | - | 20 Trp tRNA |
| 1996880 | 1996955 | + | 76 | 86156430 | Adeh_R0025 | - | 12 Thr tRNA |
| 2058807 | 2058878 | - | 72 | 86156430 | Adeh_R0026 | - | 13 Val tRNA |
| 2097560 | 2097633 | + | 74 | 86156430 | Adeh_R0027 | - | 16 Met tRNA |
| 2130853 | 2130947 | + | 95 | 86156430 | Adeh_R0028 | - | Sec tRNA |
| 2222961 | 2223032 | - | 72 | 86156430 | Adeh_R0029 | - | 13 Val tRNA |
| 2638334 | 2638410 | - | 77 | 86156430 | Adeh_R0030 | - | 16 Met tRNA |
| 2756510 | 2756585 | - | 76 | 86156430 | Adeh_R0031 | - | 02 Ala tRNA |
| 2936679 | 2936753 | - | 75 | 86156430 | Adeh_R0032 | - | 04 Glu tRNA |
| 2936814 | 2936887 | - | 74 | 86156430 | Adeh_R0033 | - | 05 Gln tRNA |
| 2943690 | 2943806 | - | 117 | 86156430 | Adeh_R0034 | - | 5S ribosomal RNA |
| 2943948 | 2946932 | - | 2985 | 86156430 | Adeh_R0035 | - | 23S ribosomal RNA |
| 2947132 | 2947207 | - | 76 | 86156430 | Adeh_R0036 | - | 02 Ala tRNA |
| 2947227 | 2947304 | - | 78 | 86156430 | Adeh_R0037 | - | 14 Ile tRNA |
| 2947498 | 2949039 | - | 1542 | 86156430 | Adeh_R0038 | - | 16S ribosomal RNA |
| 3011270 | 3011341 | - | 72 | 86156430 | Adeh_R0039 | - | 10 Lys tRNA |
| 3023662 | 3023734 | + | 73 | 86156430 | Adeh_R0040 | - | 04 Glu tRNA |
| 3115944 | 3116017 | + | 74 | 86156430 | Adeh_R0041 | - | 11 Arg tRNA |
| 3759848 | 3759921 | - | 74 | 86156430 | Adeh_R0042 | - | 03 Pro tRNA |
| 3772910 | 3772997 | + | 88 | 86156430 | Adeh_R0043 | - | 15 Leu tRNA |
| 3863438 | 3863519 | - | 82 | 86156430 | Adeh_R0044 | - | 15 Leu tRNA |
| 3867975 | 3868047 | - | 73 | 86156430 | Adeh_R0045 | - | 10 Lys tRNA |
| 3868163 | 3868236 | - | 74 | 86156430 | Adeh_R0046 | - | 11 Arg tRNA |
| 3868263 | 3868337 | - | 75 | 86156430 | Adeh_R0047 | - | 09 His tRNA |
| 3868356 | 3868429 | - | 74 | 86156430 | Adeh_R0048 | - | 11 Arg tRNA |
| 3868471 | 3868544 | - | 74 | 86156430 | Adeh_R0049 | - | 03 Pro tRNA |
| 3980145 | 3980357 | + | 213 | 86156430 | Adeh_R0050 | - | |
| 4088991 | 4089065 | - | 75 | 86156430 | Adeh_R0051 | - | 01 Gly tRNA |
| 4138082 | 4138201 | - | 120 | 86156430 | Adeh_R0052 | - | RNA component of RNaseP |
| 4166364 | 4166475 | - | 112 | 86156430 | Adeh_R0053 | - | SRP RNA; RNA component of signal recognition particle |
| 4166537 | 4166626 | - | 90 | 86156430 | Adeh_R0054 | - | 08 Ser tRNA |
| 4166905 | 4166995 | - | 91 | 86156430 | Adeh_R0055 | - | 08 Ser tRNA |
| 4428761 | 4428850 | + | 90 | 86156430 | Adeh_R0056 | - | 08 Ser tRNA |
| 4428878 | 4428969 | + | 92 | 86156430 | Adeh_R0057 | - | 08 Ser tRNA |
| 4429043 | 4429119 | + | 77 | 86156430 | Adeh_R0058 | - | 11 Arg tRNA |

