Геном прокариот/Материалы:NC 007794
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LOCUS NC_007794 3561584 bp DNA circular BCT 30-MAR-2006
DEFINITION Novosphingobium aromaticivorans DSM 12444, complete genome.
ACCESSION NC_007794
VERSION NC_007794.1 GI:87198026
KEYWORDS .
SOURCE Novosphingobium aromaticivorans DSM 12444
ORGANISM Novosphingobium aromaticivorans DSM 12444
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Novosphingobium.
REFERENCE 1 (bases 1 to 3561584)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Kyrpides,N., Ivanova,N., Fredrickson,J., Balkwill,D., Romine,M.F.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Novosphingobium aromaticivorans DSM 12444
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3561584)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3561584)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Kyrpides,N., Ivanova,N., Fredrickson,J., Balkwill,D., Romine,M.F.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000248.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from Margie
Romine(margie.romine@pnl.gov)
Contact: Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 163991 | 164075 | + | 85 | 87198026 | Saro_R0001 | - | 15 Leu tRNA |
| 249576 | 249864 | + | 289 | 87198026 | Saro_R0002 | - | |
| 251494 | 251570 | + | 77 | 87198026 | Saro_R0003 | - | 11 Arg tRNA |
| 268084 | 268150 | - | 67 | 87198026 | Saro_R0004 | - | Xaa tRNA |
| 284600 | 284674 | - | 75 | 87198026 | Saro_R0005 | - | 01 Gly tRNA |
| 516668 | 516741 | + | 74 | 87198026 | Saro_R0006 | - | 05 Gln tRNA |
| 546809 | 546882 | + | 74 | 87198026 | Saro_R0007 | - | 19 Cys tRNA |
| 665380 | 665453 | - | 74 | 87198026 | Saro_R0008 | - | 01 Gly tRNA |
| 742029 | 742115 | + | 87 | 87198026 | Saro_R0009 | - | 15 Leu tRNA |
| 839802 | 839894 | - | 93 | 87198026 | Saro_R0010 | - | 08 Ser tRNA |
| 879910 | 879985 | + | 76 | 87198026 | Saro_R0011 | - | 20 Trp tRNA |
| 904385 | 904459 | - | 75 | 87198026 | Saro_R0012 | - | 13 Val tRNA |
| 935070 | 935399 | + | 330 | 87198026 | Saro_R0013 | - | tmRNA |
| 1097478 | 1097553 | - | 76 | 87198026 | Saro_R0014 | - | 17 Phe tRNA |
| 1193066 | 1193141 | + | 76 | 87198026 | Saro_R0015 | - | 02 Ala tRNA |
| 1251847 | 1251923 | - | 77 | 87198026 | Saro_R0016 | - | 03 Pro tRNA |
| 1329830 | 1329904 | - | 75 | 87198026 | Saro_R0017 | - | 13 Val tRNA |
| 1371021 | 1371096 | + | 76 | 87198026 | Saro_R0018 | - | 02 Ala tRNA |
| 1385864 | 1385939 | + | 76 | 87198026 | Saro_R0019 | - | 12 Thr tRNA |
| 1394303 | 1394378 | - | 76 | 87198026 | Saro_R0020 | - | 16 Met tRNA |
| 1403602 | 1403693 | + | 92 | 87198026 | Saro_R0021 | - | SRP RNA; RNA component of signal recognition particle |
| 1413246 | 1413331 | + | 86 | 87198026 | Saro_R0022 | - | 18 Tyr tRNA |
| 1431862 | 1431938 | + | 77 | 87198026 | Saro_R0023 | - | 09 His tRNA |
| 1493941 | 1494031 | + | 91 | 87198026 | Saro_R0024 | - | 08 Ser tRNA |
| 1702491 | 1702567 | - | 77 | 87198026 | Saro_R0025 | - | 16 Met tRNA |
| 1926155 | 1926262 | + | 108 | 87198026 | Saro_R0026 | - | |
| 1949626 | 1949721 | + | 96 | 87198026 | Saro_R0027 | - | |
| 1949722 | 1949846 | + | 125 | 87198026 | Saro_R0028 | - | |
| 2019859 | 2019935 | + | 77 | 87198026 | Saro_R0029 | - | 11 Arg tRNA |
| 2019998 | 2020074 | + | 77 | 87198026 | Saro_R0030 | - | 11 Arg tRNA |
| 2060462 | 2060551 | + | 90 | 87198026 | Saro_R0031 | - | 08 Ser tRNA |
| 2075543 | 2075626 | - | 84 | 87198026 | Saro_R0032 | - | 15 Leu tRNA |
| 2089583 | 2089659 | - | 77 | 87198026 | Saro_R0033 | - | 06 Asp tRNA |
| 2089968 | 2090044 | - | 77 | 87198026 | Saro_R0034 | - | 06 Asp tRNA |
| 2095661 | 2095737 | + | 77 | 87198026 | Saro_R0035 | - | 03 Pro tRNA |
| 2105462 | 2105536 | + | 75 | 87198026 | Saro_R0036 | - | 07 Asn tRNA |
| 2144419 | 2144495 | - | 77 | 87198026 | Saro_R0037 | - | 11 Arg tRNA |
| 2214965 | 2215041 | + | 77 | 87198026 | Saro_R0038 | - | 03 Pro tRNA |
| 2272437 | 2272512 | + | 76 | 87198026 | Saro_R0039 | - | 10 Lys tRNA |
| 2272556 | 2272631 | + | 76 | 87198026 | Saro_R0040 | - | 10 Lys tRNA |
| 2334344 | 2334429 | - | 86 | 87198026 | Saro_R0041 | - | |
| 2415278 | 2415352 | + | 75 | 87198026 | Saro_R0042 | - | 04 Glu tRNA |
| 2415412 | 2415486 | + | 75 | 87198026 | Saro_R0043 | - | 04 Glu tRNA |
| 2679696 | 2679785 | - | 90 | 87198026 | Saro_R0044 | - | 08 Ser tRNA |
| 2697099 | 2697175 | + | 77 | 87198026 | Saro_R0045 | - | 11 Arg tRNA |
| 2752877 | 2752952 | + | 76 | 87198026 | Saro_R0046 | - | 12 Thr tRNA |
| 2804473 | 2804547 | + | 75 | 87198026 | Saro_R0047 | - | 05 Gln tRNA |
| 2847088 | 2847164 | - | 77 | 87198026 | Saro_R0048 | - | 16 Met tRNA |
| 2847288 | 2847402 | - | 115 | 87198026 | Saro_R0049 | - | 5S ribosomal RNA |
| 2847556 | 2850338 | - | 2783 | 87198026 | Saro_R0050 | - | 23S ribosomal RNA |
| 2850668 | 2850743 | - | 76 | 87198026 | Saro_R0051 | - | 02 Ala tRNA |
| 2850762 | 2850838 | - | 77 | 87198026 | Saro_R0052 | - | 14 Ile tRNA |
| 2851010 | 2852488 | - | 1479 | 87198026 | Saro_R0053 | - | 16S ribosomal RNA |
| 2852821 | 2852897 | - | 77 | 87198026 | Saro_R0054 | - | 16 Met tRNA |
| 2853021 | 2853135 | - | 115 | 87198026 | Saro_R0055 | - | 5S ribosomal RNA |
| 2853289 | 2856071 | - | 2783 | 87198026 | Saro_R0056 | - | 23S ribosomal RNA |
| 2856401 | 2856476 | - | 76 | 87198026 | Saro_R0057 | - | 02 Ala tRNA |
| 2856495 | 2856571 | - | 77 | 87198026 | Saro_R0058 | - | 14 Ile tRNA |
| 2856743 | 2858221 | - | 1479 | 87198026 | Saro_R0059 | - | 16S ribosomal RNA |
| 2858554 | 2858630 | - | 77 | 87198026 | Saro_R0060 | - | 16 Met tRNA |
| 2858754 | 2858868 | - | 115 | 87198026 | Saro_R0061 | - | 5S ribosomal RNA |
| 2859022 | 2861804 | - | 2783 | 87198026 | Saro_R0062 | - | 23S ribosomal RNA |
| 2862134 | 2862209 | - | 76 | 87198026 | Saro_R0063 | - | 02 Ala tRNA |
| 2862228 | 2862304 | - | 77 | 87198026 | Saro_R0064 | - | 14 Ile tRNA |
| 2862476 | 2863954 | - | 1479 | 87198026 | Saro_R0065 | - | 16S ribosomal RNA |
| 2932877 | 2932952 | + | 76 | 87198026 | Saro_R0066 | - | 13 Val tRNA |
| 2980738 | 2980807 | + | 70 | 87198026 | Saro_R0067 | - | 13 Val tRNA |
| 3200632 | 3200717 | + | 86 | 87198026 | Saro_R0068 | - | Xaa tRNA |
| 3237082 | 3237155 | - | 74 | 87198026 | Saro_R0069 | - | 01 Gly tRNA |
| 3267285 | 3267641 | + | 357 | 87198026 | Saro_R0070 | - | RNA component of RNaseP |
| 3277055 | 3277139 | - | 85 | 87198026 | Saro_R0071 | - | 15 Leu tRNA |
| 3300661 | 3300747 | + | 87 | 87198026 | Saro_R0072 | - | 15 Leu tRNA |
| 3312660 | 3312735 | - | 76 | 87198026 | Saro_R0073 | - | 10 Lys tRNA |
| 3486528 | 3486602 | + | 75 | 87198026 | Saro_R0074 | - | 12 Thr tRNA |

