Геном прокариот/Материалы:NC 007963
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LOCUS NC_007963 3696649 bp DNA circular BCT 17-APR-2006
DEFINITION Chromohalobacter salexigens DSM 3043, complete genome.
ACCESSION NC_007963
VERSION NC_007963.1 GI:92112136
KEYWORDS .
SOURCE Chromohalobacter salexigens DSM 3043
ORGANISM Chromohalobacter salexigens DSM 3043
Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
Halomonadaceae; Chromohalobacter.
REFERENCE 1 (bases 1 to 3696649)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Saunders,E.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromohalobacter salexigens DSM 3043
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3696649)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (17-APR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3696649)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Saunders,E.,
Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (15-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000285.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634505
Source DNA available from Laszlo Csonka
(lcsonka@bilbo.bio.purdue.edu)
Bacteria available from DSMZ: DSM 3043
Contacts:
Laszlo Csonka (lcsonka@bilbo.bio.purdue.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 454940 | 456413 | + | 1474 | 92112136 | Csal_R0001 | - | 16S ribosomal RNA |
| 456548 | 456624 | + | 77 | 92112136 | Csal_R0002 | - | 14 Ile tRNA |
| 456732 | 456807 | + | 76 | 92112136 | Csal_R0003 | - | 02 Ala tRNA |
| 456987 | 459883 | + | 2897 | 92112136 | Csal_R0004 | - | 23S ribosomal RNA |
| 459986 | 460101 | + | 116 | 92112136 | Csal_R0005 | - | 5S ribosomal RNA |
| 462206 | 462289 | + | 84 | 92112136 | Csal_R0006 | - | 18 Tyr tRNA |
| 462339 | 462412 | + | 74 | 92112136 | Csal_R0007 | - | 01 Gly tRNA |
| 462421 | 462495 | + | 75 | 92112136 | Csal_R0008 | - | 12 Thr tRNA |
| 462617 | 462692 | + | 76 | 92112136 | Csal_R0009 | - | 20 Trp tRNA |
| 522085 | 522161 | - | 77 | 92112136 | Csal_R0010 | - | 03 Pro tRNA |
| 557343 | 558816 | + | 1474 | 92112136 | Csal_R0011 | - | 16S ribosomal RNA |
| 558957 | 559033 | + | 77 | 92112136 | Csal_R0012 | - | 14 Ile tRNA |
| 559251 | 559326 | + | 76 | 92112136 | Csal_R0013 | - | 02 Ala tRNA |
| 559506 | 562402 | + | 2897 | 92112136 | Csal_R0014 | - | 23S ribosomal RNA |
| 562505 | 562620 | + | 116 | 92112136 | Csal_R0015 | - | 5S ribosomal RNA |
| 580057 | 580132 | + | 76 | 92112136 | Csal_R0016 | - | 17 Phe tRNA |
| 580139 | 580213 | + | 75 | 92112136 | Csal_R0017 | - | 05 Gln tRNA |
| 580235 | 580310 | + | 76 | 92112136 | Csal_R0018 | - | 12 Thr tRNA |
| 584792 | 584867 | + | 76 | 92112136 | Csal_R0019 | - | 12 Thr tRNA |
| 705419 | 705511 | + | 93 | 92112136 | Csal_R0020 | - | 08 Ser tRNA |
| 705541 | 705617 | + | 77 | 92112136 | Csal_R0021 | - | 11 Arg tRNA |
| 705704 | 705780 | + | 77 | 92112136 | Csal_R0022 | - | 11 Arg tRNA |
| 951832 | 951906 | + | 75 | 92112136 | Csal_R0023 | - | 10 Lys tRNA |
| 951949 | 952023 | + | 75 | 92112136 | Csal_R0024 | - | 10 Lys tRNA |
| 952058 | 952132 | + | 75 | 92112136 | Csal_R0025 | - | 10 Lys tRNA |
| 985955 | 986030 | + | 76 | 92112136 | Csal_R0026 | - | 13 Val tRNA |
| 986081 | 986157 | + | 77 | 92112136 | Csal_R0027 | - | 06 Asp tRNA |
| 986206 | 986282 | + | 77 | 92112136 | Csal_R0028 | - | 06 Asp tRNA |
| 986339 | 986415 | + | 77 | 92112136 | Csal_R0029 | - | 13 Val tRNA |
| 986438 | 986514 | + | 77 | 92112136 | Csal_R0030 | - | 06 Asp tRNA |
| 997605 | 997691 | - | 87 | 92112136 | Csal_R0031 | - | 15 Leu tRNA |
| 997716 | 997802 | - | 87 | 92112136 | Csal_R0032 | - | 15 Leu tRNA |
| 997838 | 997924 | - | 87 | 92112136 | Csal_R0033 | - | 15 Leu tRNA |
| 1078902 | 1079036 | - | 135 | 92112136 | Csal_R0034 | - | |
| 1196492 | 1196568 | + | 77 | 92112136 | Csal_R0035 | - | 16 Met tRNA |
| 1252992 | 1253128 | + | 137 | 92112136 | Csal_R0036 | - | |
| 1386433 | 1386508 | + | 76 | 92112136 | Csal_R0037 | - | 02 Ala tRNA |
| 1386525 | 1386600 | + | 76 | 92112136 | Csal_R0038 | - | 04 Glu tRNA |
| 1431797 | 1431872 | - | 76 | 92112136 | Csal_R0039 | - | 01 Gly tRNA |
| 1548665 | 1548740 | + | 76 | 92112136 | Csal_R0040 | - | 04 Glu tRNA |
| 1548764 | 1548838 | + | 75 | 92112136 | Csal_R0041 | - | 01 Gly tRNA |
| 1549001 | 1549076 | + | 76 | 92112136 | Csal_R0042 | - | 04 Glu tRNA |
| 1549118 | 1549192 | + | 75 | 92112136 | Csal_R0043 | - | 01 Gly tRNA |
| 1549215 | 1549290 | + | 76 | 92112136 | Csal_R0044 | - | 04 Glu tRNA |
| 1553348 | 1553435 | + | 88 | 92112136 | Csal_R0045 | - | 08 Ser tRNA |
| 1651738 | 1651855 | + | 118 | 92112136 | Csal_R0046 | - | SRP RNA; RNA component of signal recognition particle |
| 1704632 | 1704863 | - | 232 | 92112136 | Csal_R0047 | - | |
| 1726909 | 1726985 | + | 77 | 92112136 | Csal_R0048 | - | 16 Met tRNA |
| 1727230 | 1727305 | + | 76 | 92112136 | Csal_R0049 | - | 07 Asn tRNA |
| 1727328 | 1727403 | + | 76 | 92112136 | Csal_R0050 | - | 07 Asn tRNA |
| 1727432 | 1727507 | + | 76 | 92112136 | Csal_R0051 | - | 07 Asn tRNA |
| 1733361 | 1733437 | - | 77 | 92112136 | Csal_R0052 | - | 16 Met tRNA |
| 1737126 | 1737201 | - | 76 | 92112136 | Csal_R0053 | - | 05 Gln tRNA |
| 2039871 | 2039947 | - | 77 | 92112136 | Csal_R0054 | - | 03 Pro tRNA |
| 2078081 | 2079554 | + | 1474 | 92112136 | Csal_R0055 | - | 16S ribosomal RNA |
| 2079689 | 2079765 | + | 77 | 92112136 | Csal_R0056 | - | 14 Ile tRNA |
| 2079887 | 2079962 | + | 76 | 92112136 | Csal_R0057 | - | 02 Ala tRNA |
| 2080142 | 2083038 | + | 2897 | 92112136 | Csal_R0058 | - | 23S ribosomal RNA |
| 2083141 | 2083256 | + | 116 | 92112136 | Csal_R0059 | - | 5S ribosomal RNA |
| 2185514 | 2185603 | + | 90 | 92112136 | Csal_R0060 | - | 08 Ser tRNA |
| 2185723 | 2185813 | + | 91 | 92112136 | Csal_R0061 | - | 08 Ser tRNA |
| 2189682 | 2189788 | + | 107 | 92112136 | Csal_R0062 | - | |
| 2311526 | 2311600 | - | 75 | 92112136 | Csal_R0063 | - | 09 His tRNA |
| 2311634 | 2311708 | - | 75 | 92112136 | Csal_R0064 | - | 09 His tRNA |
| 2311759 | 2311835 | - | 77 | 92112136 | Csal_R0065 | - | 11 Arg tRNA |
| 2311895 | 2311971 | - | 77 | 92112136 | Csal_R0066 | - | 03 Pro tRNA |
| 2371927 | 2372003 | - | 77 | 92112136 | Csal_R0067 | - | 13 Val tRNA |
| 2372065 | 2372141 | - | 77 | 92112136 | Csal_R0068 | - | 13 Val tRNA |
| 2399776 | 2399851 | - | 76 | 92112136 | Csal_R0069 | - | 02 Ala tRNA |
| 2403437 | 2403511 | + | 75 | 92112136 | Csal_R0070 | - | 01 Gly tRNA |
| 2403586 | 2403659 | + | 74 | 92112136 | Csal_R0071 | - | 19 Cys tRNA |
| 2403695 | 2403781 | + | 87 | 92112136 | Csal_R0072 | - | 15 Leu tRNA |
| 2475702 | 2476000 | - | 299 | 92112136 | Csal_R0073 | - | RNA component of RNaseP |
| 2584594 | 2584678 | - | 85 | 92112136 | Csal_R0074 | - | 15 Leu tRNA |
| 2715800 | 2715915 | - | 116 | 92112136 | Csal_R0075 | - | 5S ribosomal RNA |
| 2716018 | 2718915 | - | 2898 | 92112136 | Csal_R0076 | - | 23S ribosomal RNA |
| 2719183 | 2719258 | - | 76 | 92112136 | Csal_R0077 | - | 02 Ala tRNA |
| 2719380 | 2719456 | - | 77 | 92112136 | Csal_R0078 | - | 14 Ile tRNA |
| 2719591 | 2721064 | - | 1474 | 92112136 | Csal_R0079 | - | 16S ribosomal RNA |
| 2875011 | 2875087 | + | 77 | 92112136 | Csal_R0080 | - | 11 Arg tRNA |
| 3160950 | 3161036 | - | 87 | 92112136 | Csal_R0081 | - | 15 Leu tRNA |
| 3375098 | 3375174 | + | 77 | 92112136 | Csal_R0082 | - | 16 Met tRNA |
| 3392848 | 3392963 | - | 116 | 92112136 | Csal_R0083 | - | 5S ribosomal RNA |
| 3393066 | 3395962 | - | 2897 | 92112136 | Csal_R0084 | - | 23S ribosomal RNA |
| 3396214 | 3396289 | - | 76 | 92112136 | Csal_R0085 | - | 02 Ala tRNA |
| 3396453 | 3396529 | - | 77 | 92112136 | Csal_R0086 | - | 14 Ile tRNA |
| 3396670 | 3398143 | - | 1474 | 92112136 | Csal_R0087 | - | 16S ribosomal RNA |
| 3427948 | 3428024 | - | 77 | 92112136 | Csal_R0088 | - | 16 Met tRNA |
| 3428132 | 3428218 | - | 87 | 92112136 | Csal_R0089 | - | 15 Leu tRNA |
| 3553307 | 3553383 | - | 77 | 92112136 | Csal_R0090 | - | 11 Arg tRNA |

