Геном прокариот/Материалы:NC 008009
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LOCUS NC_008009 5650368 bp DNA circular BCT 10-MAY-2006
DEFINITION Candidatus Koribacter versatilis Ellin345, complete genome.
ACCESSION NC_008009
VERSION NC_008009.1 GI:94967031
KEYWORDS .
SOURCE Candidatus Koribacter versatilis Ellin345
ORGANISM Candidatus Koribacter versatilis Ellin345
Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae.
REFERENCE 1 (bases 1 to 5650368)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Kiss,H., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Lykidis,A., Kuske,C., Janssen,P.H. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Acidobacteria bacterium Ellin345
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5650368)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5650368)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Kiss,H., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Lykidis,A., Kuske,C., Janssen,P.H. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (25-APR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000360.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000157
Source DNA and bacteria available from Cheryl Kuske
(kuske@lanl.gov)
Contacts: Cheryl Kuske (kuske@lanl.gov)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 226249 | 226325 | - | 77 | 94967031 | Acid345_R0001 | - | 11 Arg tRNA |
| 321964 | 322040 | - | 77 | 94967031 | Acid345_R0002 | - | 03 Pro tRNA |
| 327098 | 327184 | + | 87 | 94967031 | Acid345_R0003 | - | 15 Leu tRNA |
| 436855 | 436916 | + | 62 | 94967031 | Acid345_R0004 | - | |
| 478049 | 478137 | + | 89 | 94967031 | Acid345_R0005 | - | 15 Leu tRNA |
| 623241 | 623317 | + | 77 | 94967031 | Acid345_R0006 | - | 03 Pro tRNA |
| 782919 | 782994 | + | 76 | 94967031 | Acid345_R0007 | - | 10 Lys tRNA |
| 965656 | 965730 | + | 75 | 94967031 | Acid345_R0008 | - | 13 Val tRNA |
| 1015247 | 1015321 | + | 75 | 94967031 | Acid345_R0009 | - | 01 Gly tRNA |
| 1015412 | 1015486 | + | 75 | 94967031 | Acid345_R0010 | - | 19 Cys tRNA |
| 1319335 | 1319410 | + | 76 | 94967031 | Acid345_R0011 | - | 17 Phe tRNA |
| 1343299 | 1343372 | - | 74 | 94967031 | Acid345_R0012 | - | 05 Gln tRNA |
| 1411021 | 1411096 | + | 76 | 94967031 | Acid345_R0013 | - | 12 Thr tRNA |
| 1549908 | 1550249 | - | 342 | 94967031 | Acid345_R0014 | - | RNA component of RNaseP |
| 2183383 | 2183459 | - | 77 | 94967031 | Acid345_R0015 | - | 11 Arg tRNA |
| 2275711 | 2275787 | - | 77 | 94967031 | Acid345_R0016 | - | 11 Arg tRNA |
| 2284754 | 2284838 | - | 85 | 94967031 | Acid345_R0017 | - | 15 Leu tRNA |
| 2308256 | 2308330 | + | 75 | 94967031 | Acid345_R0018 | - | 07 Asn tRNA |
| 2354596 | 2354670 | - | 75 | 94967031 | Acid345_R0019 | - | 01 Gly tRNA |
| 2379908 | 2379997 | - | 90 | 94967031 | Acid345_R0020 | - | 08 Ser tRNA |
| 2416096 | 2416209 | + | 114 | 94967031 | Acid345_R0021 | - | SRP RNA; RNA component of signal recognition particle |
| 2480985 | 2481062 | - | 78 | 94967031 | Acid345_R0022 | - | 04 Glu tRNA |
| 2568155 | 2568230 | + | 76 | 94967031 | Acid345_R0023 | - | 02 Ala tRNA |
| 2891224 | 2891308 | + | 85 | 94967031 | Acid345_R0024 | - | 15 Leu tRNA |
| 3278034 | 3278109 | + | 76 | 94967031 | Acid345_R0025 | - | 10 Lys tRNA |
| 3458746 | 3458821 | - | 76 | 94967031 | Acid345_R0026 | - | Xaa tRNA |
| 3720631 | 3720719 | - | 89 | 94967031 | Acid345_R0027 | - | 15 Leu tRNA |
| 3783475 | 3783551 | + | 77 | 94967031 | Acid345_R0028 | - | 11 Arg tRNA |
| 3907637 | 3907713 | - | 77 | 94967031 | Acid345_R0029 | - | 16 Met tRNA |
| 4130979 | 4131054 | + | 76 | 94967031 | Acid345_R0030 | - | 16 Met tRNA |
| 4184267 | 4184328 | + | 62 | 94967031 | Acid345_R0031 | - | |
| 4447548 | 4447637 | - | 90 | 94967031 | Acid345_R0032 | - | 08 Ser tRNA |
| 4551744 | 4551819 | - | 76 | 94967031 | Acid345_R0033 | - | 02 Ala tRNA |
| 4614262 | 4614336 | - | 75 | 94967031 | Acid345_R0034 | - | 04 Glu tRNA |
| 4616518 | 4616592 | + | 75 | 94967031 | Acid345_R0035 | - | 09 His tRNA |
| 4689838 | 4689914 | - | 77 | 94967031 | Acid345_R0036 | - | 03 Pro tRNA |
| 4748291 | 4748368 | + | 78 | 94967031 | Acid345_R0037 | - | 13 Val tRNA |
| 4763124 | 4763200 | - | 77 | 94967031 | Acid345_R0038 | - | 06 Asp tRNA |
| 4763226 | 4763302 | - | 77 | 94967031 | Acid345_R0039 | - | 13 Val tRNA |
| 4776758 | 4776834 | + | 77 | 94967031 | Acid345_R0040 | - | 11 Arg tRNA |
| 5023050 | 5023126 | - | 77 | 94967031 | Acid345_R0041 | - | 16 Met tRNA |
| 5080202 | 5080294 | - | 93 | 94967031 | Acid345_R0042 | - | 08 Ser tRNA |
| 5256011 | 5256127 | - | 117 | 94967031 | Acid345_R0043 | - | 5S ribosomal RNA |
| 5256362 | 5259327 | - | 2966 | 94967031 | Acid345_R0044 | - | 23S ribosomal RNA |
| 5259667 | 5259742 | - | 76 | 94967031 | Acid345_R0045 | - | 02 Ala tRNA |
| 5259750 | 5259826 | - | 77 | 94967031 | Acid345_R0046 | - | 14 Ile tRNA |
| 5260068 | 5261561 | - | 1494 | 94967031 | Acid345_R0047 | - | 16S ribosomal RNA |
| 5276687 | 5276776 | - | 90 | 94967031 | Acid345_R0048 | - | 08 Ser tRNA |
| 5323474 | 5323676 | - | 203 | 94967031 | Acid345_R0049 | - | |
| 5385087 | 5385160 | - | 74 | 94967031 | Acid345_R0050 | - | 05 Gln tRNA |
| 5543513 | 5543588 | - | 76 | 94967031 | Acid345_R0051 | - | 20 Trp tRNA |
| 5545511 | 5545586 | - | 76 | 94967031 | Acid345_R0052 | - | 12 Thr tRNA |
| 5545607 | 5545681 | - | 75 | 94967031 | Acid345_R0053 | - | 01 Gly tRNA |
| 5545970 | 5546057 | - | 88 | 94967031 | Acid345_R0054 | - | 18 Tyr tRNA |
| 5546322 | 5546397 | - | 76 | 94967031 | Acid345_R0055 | - | 12 Thr tRNA |

