Геном прокариот/Материалы:NC 008312
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LOCUS NC_008312 7750108 bp DNA circular BCT 08-AUG-2007
DEFINITION Trichodesmium erythraeum IMS101, complete genome.
ACCESSION NC_008312
VERSION NC_008312.1 GI:113473942
KEYWORDS .
SOURCE Trichodesmium erythraeum IMS101
ORGANISM Trichodesmium erythraeum IMS101
Bacteria; Cyanobacteria; Oscillatoriales; Trichodesmium.
REFERENCE 1 (bases 1 to 7750108)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R.,
Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Kim,E. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Trichodesmium erythraeum IMS101
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7750108)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 7750108)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R.,
Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Kim,E. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (21-JUN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000393.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2662189
Source DNA and bacteria available from John B. Waterbury
(jwaterbury@whoi.edu)
Contacts: John B. Waterbury (jwaterbury@whoi.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Additional Notes: The following regions have an unresolved number
of repeat copies: 2426365-2431895, 3531561-3532440,
4808319-4799188, 5967783-5973981, 7275245-7279260.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 272619 | 272692 | - | 74 | 113473942 | Tery_R0001 | - | 13 Val tRNA |
| 280981 | 281054 | + | 74 | 113473942 | Tery_R0002 | - | 06 Asp tRNA |
| 367817 | 367889 | - | 73 | 113473942 | Tery_R0003 | - | 16 Met tRNA |
| 412296 | 412368 | - | 73 | 113473942 | Tery_R0004 | - | 20 Trp tRNA |
| 572149 | 572221 | - | 73 | 113473942 | Tery_R0005 | - | 04 Glu tRNA |
| 869671 | 869743 | - | 73 | 113473942 | Tery_R0006 | - | 17 Phe tRNA |
| 1212925 | 1213011 | - | 87 | 113473942 | Tery_R0007 | - | 08 Ser tRNA |
| 1900405 | 1900476 | - | 72 | 113473942 | Tery_R0008 | - | 07 Asn tRNA |
| 2171224 | 2171295 | + | 72 | 113473942 | Tery_R0009 | - | 01 Gly tRNA |
| 2447382 | 2447483 | + | 102 | 113473942 | Tery_R0010 | - | SRP RNA; RNA component of signal recognition particle |
| 2502921 | 2502994 | + | 74 | 113473942 | Tery_R0011 | - | 03 Pro tRNA |
| 2690413 | 2690485 | + | 73 | 113473942 | Tery_R0012 | - | 02 Ala tRNA |
| 2955814 | 2955895 | + | 82 | 113473942 | Tery_R0013 | - | 15 Leu tRNA |
| 3137164 | 3138645 | + | 1482 | 113473942 | Tery_R0014 | - | 16S ribosomal RNA |
| 3138776 | 3138852 | + | 77 | 113473942 | Tery_R0015 | - | 14 Ile tRNA |
| 3138864 | 3138936 | + | 73 | 113473942 | Tery_R0016 | - | 02 Ala tRNA |
| 3139115 | 3141995 | + | 2881 | 113473942 | Tery_R0017 | - | 23S ribosomal RNA |
| 3279184 | 3279256 | + | 73 | 113473942 | Tery_R0018 | - | 16 Met tRNA |
| 3280098 | 3280170 | + | 73 | 113473942 | Tery_R0019 | - | 16 Met tRNA |
| 3343975 | 3344047 | - | 73 | 113473942 | Tery_R0020 | - | 12 Thr tRNA |
| 3463816 | 3464174 | - | 359 | 113473942 | Tery_R0021 | - | RNA component of RNaseP |
| 3785863 | 3785935 | + | 73 | 113473942 | Tery_R0022 | - | 11 Arg tRNA |
| 3792558 | 3792654 | - | 97 | 113473942 | Tery_R0023 | - | |
| 4198353 | 4198442 | + | 90 | 113473942 | Tery_R0024 | - | 08 Ser tRNA |
| 4204343 | 4204415 | - | 73 | 113473942 | Tery_R0025 | - | 11 Arg tRNA |
| 4598528 | 4601408 | - | 2881 | 113473942 | Tery_R0026 | - | 23S ribosomal RNA |
| 4601587 | 4601659 | - | 73 | 113473942 | Tery_R0027 | - | 02 Ala tRNA |
| 4601671 | 4601747 | - | 77 | 113473942 | Tery_R0028 | - | 14 Ile tRNA |
| 4601878 | 4603359 | - | 1482 | 113473942 | Tery_R0029 | - | 16S ribosomal RNA |
| 4812963 | 4813033 | - | 71 | 113473942 | Tery_R0030 | - | 01 Gly tRNA |
| 4846872 | 4846955 | - | 84 | 113473942 | Tery_R0031 | - | 15 Leu tRNA |
| 5151622 | 5151693 | - | 72 | 113473942 | Tery_R0032 | - | 05 Gln tRNA |
| 5267766 | 5267839 | + | 74 | 113473942 | Tery_R0033 | - | 03 Pro tRNA |
| 5424986 | 5425170 | - | 185 | 113473942 | Tery_R0034 | - | |
| 5573494 | 5573567 | + | 74 | 113473942 | Tery_R0035 | - | 11 Arg tRNA |
| 5630800 | 5630872 | - | 73 | 113473942 | Tery_R0036 | - | 09 His tRNA |
| 5694355 | 5694435 | - | 81 | 113473942 | Tery_R0037 | - | 15 Leu tRNA |
| 5741481 | 5741562 | + | 82 | 113473942 | Tery_R0038 | - | 18 Tyr tRNA |
| 5741588 | 5741659 | + | 72 | 113473942 | Tery_R0039 | - | 12 Thr tRNA |
| 5852521 | 5852592 | - | 72 | 113473942 | Tery_R0040 | - | 13 Val tRNA |
| 5974625 | 5974709 | - | 85 | 113473942 | Tery_R0041 | - | 08 Ser tRNA |
| 6170197 | 6170278 | - | 82 | 113473942 | Tery_R0042 | - | 15 Leu tRNA |
| 6323345 | 6323416 | - | 72 | 113473942 | Tery_R0043 | - | 10 Lys tRNA |
| 6399951 | 6400035 | + | 85 | 113473942 | Tery_R0044 | - | 08 Ser tRNA |
| 6426812 | 6426883 | + | 72 | 113473942 | Tery_R0045 | - | 19 Cys tRNA |
| 6712130 | 6712246 | - | 117 | 113473942 | Tery_R0046 | - | 5S ribosomal RNA |
| 6935042 | 6935125 | + | 84 | 113473942 | Tery_R0047 | - | 15 Leu tRNA |
| 7574767 | 7575161 | + | 395 | 113473942 | Tery_R0048 | - | tmRNA |

