Геном прокариот/Материалы:NC 008340
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LOCUS NC_008340 3275944 bp DNA circular BCT 14-SEP-2006
DEFINITION Alkalilimnicola ehrlichei MLHE-1, complete genome.
ACCESSION NC_008340
VERSION NC_008340.1 GI:114319166
KEYWORDS .
SOURCE Alkalilimnicola ehrlichei MLHE-1
ORGANISM Alkalilimnicola ehrlichei MLHE-1
Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
Ectothiorhodospiraceae; Alkalilimnicola.
REFERENCE 1 (bases 1 to 3275944)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Oremland,R.S., Hoeft,S.E., Switzer-Blum,J., Kulp,T.,
King,G., Tabita,R., Witte,B., Santini,J.M., Basu,P.,
Hollibaugh,J.T., Xie,G., Stolz,J.F. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Alkalilimnicola ehrilichei MLHE-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3275944)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3275944)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Oremland,R.S., Hoeft,S.E., Switzer-Blum,J., Kulp,T.,
King,G., Tabita,R., Witte,B., Santini,J.M., Basu,P.,
Hollibaugh,J.T., Xie,G., Stolz,J.F. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (28-AUG-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000453.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000239
Source DNA and bacteria available from John F. Stolz
(stolz@duq.edu)
Contacts: John F. Stolz (stolz@duq.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 97604 | 97677 | + | 74 | 114319166 | Mlg_R0001 | - | 01 Gly tRNA |
| 274056 | 274131 | - | 76 | 114319166 | Mlg_R0002 | - | 10 Lys tRNA |
| 324945 | 325019 | + | 75 | 114319166 | Mlg_R0003 | - | 05 Gln tRNA |
| 368208 | 369739 | + | 1532 | 114319166 | Mlg_R0004 | - | 16S ribosomal RNA |
| 369818 | 369894 | + | 77 | 114319166 | Mlg_R0005 | - | 14 Ile tRNA |
| 370065 | 370140 | + | 76 | 114319166 | Mlg_R0006 | - | 02 Ala tRNA |
| 370366 | 373263 | + | 2898 | 114319166 | Mlg_R0007 | - | 23S ribosomal RNA |
| 373383 | 373499 | + | 117 | 114319166 | Mlg_R0008 | - | 5S ribosomal RNA |
| 488343 | 489874 | + | 1532 | 114319166 | Mlg_R0009 | - | 16S ribosomal RNA |
| 489953 | 490029 | + | 77 | 114319166 | Mlg_R0010 | - | 14 Ile tRNA |
| 490201 | 490276 | + | 76 | 114319166 | Mlg_R0011 | - | 02 Ala tRNA |
| 490502 | 493399 | + | 2898 | 114319166 | Mlg_R0012 | - | 23S ribosomal RNA |
| 493519 | 493635 | + | 117 | 114319166 | Mlg_R0013 | - | 23S ribosomal RNA |
| 497459 | 497534 | + | 76 | 114319166 | Mlg_R0014 | - | 12 Thr tRNA |
| 499602 | 499686 | + | 85 | 114319166 | Mlg_R0015 | - | 18 Tyr tRNA |
| 499726 | 499799 | + | 74 | 114319166 | Mlg_R0016 | - | 01 Gly tRNA |
| 499821 | 499896 | + | 76 | 114319166 | Mlg_R0017 | - | 12 Thr tRNA |
| 501217 | 501292 | + | 76 | 114319166 | Mlg_R0018 | - | 20 Trp tRNA |
| 539503 | 539578 | + | 76 | 114319166 | Mlg_R0019 | - | 12 Thr tRNA |
| 610119 | 610193 | - | 75 | 114319166 | Mlg_R0020 | - | 04 Glu tRNA |
| 629590 | 629676 | - | 87 | 114319166 | Mlg_R0021 | - | 15 Leu tRNA |
| 643969 | 644045 | + | 77 | 114319166 | Mlg_R0022 | - | 03 Pro tRNA |
| 644094 | 644170 | + | 77 | 114319166 | Mlg_R0023 | - | 11 Arg tRNA |
| 644208 | 644283 | + | 76 | 114319166 | Mlg_R0024 | - | 09 His tRNA |
| 644290 | 644365 | + | 76 | 114319166 | Mlg_R0025 | - | 10 Lys tRNA |
| 680908 | 680984 | - | 77 | 114319166 | Mlg_R0026 | - | 11 Arg tRNA |
| 697040 | 697115 | - | 76 | 114319166 | Mlg_R0027 | - | 02 Ala tRNA |
| 847408 | 847484 | - | 77 | 114319166 | Mlg_R0028 | - | 03 Pro tRNA |
| 887757 | 887833 | - | 77 | 114319166 | Mlg_R0029 | - | 13 Val tRNA |
| 943640 | 943716 | - | 77 | 114319166 | Mlg_R0030 | - | 03 Pro tRNA |
| 1160083 | 1160172 | + | 90 | 114319166 | Mlg_R0031 | - | 08 Ser tRNA |
| 1248149 | 1248224 | - | 76 | 114319166 | Mlg_R0032 | - | 07 Asn tRNA |
| 1415805 | 1415889 | - | 85 | 114319166 | Mlg_R0033 | - | 15 Leu tRNA |
| 1495246 | 1495336 | + | 91 | 114319166 | Mlg_R0034 | - | 08 Ser tRNA |
| 1504176 | 1504251 | + | 76 | 114319166 | Mlg_R0035 | - | 02 Ala tRNA |
| 1504380 | 1504455 | + | 76 | 114319166 | Mlg_R0036 | - | 02 Ala tRNA |
| 1561501 | 1561576 | + | 76 | 114319166 | Mlg_R0037 | - | 01 Gly tRNA |
| 1561705 | 1561778 | + | 74 | 114319166 | Mlg_R0038 | - | 19 Cys tRNA |
| 1561830 | 1561915 | + | 86 | 114319166 | Mlg_R0039 | - | 15 Leu tRNA |
| 1690014 | 1690090 | - | 77 | 114319166 | Mlg_R0040 | - | 11 Arg tRNA |
| 1690137 | 1690228 | - | 92 | 114319166 | Mlg_R0041 | - | 08 Ser tRNA |
| 1723912 | 1724029 | - | 118 | 114319166 | Mlg_R0042 | - | SRP RNA; RNA component of signal recognition particle |
| 1774516 | 1774590 | - | 75 | 114319166 | Mlg_R0043 | - | 13 Val tRNA |
| 1826410 | 1826497 | + | 88 | 114319166 | Mlg_R0044 | - | 08 Ser tRNA |
| 1866616 | 1866691 | - | 76 | 114319166 | Mlg_R0045 | - | 04 Glu tRNA |
| 2175428 | 2175783 | + | 356 | 114319166 | Mlg_R0057 | - | tmRNA |
| 2219534 | 2219610 | - | 77 | 114319166 | Mlg_R0046 | - | 16 Met tRNA |
| 2240609 | 2240693 | - | 85 | 114319166 | Mlg_R0047 | - | 15 Leu tRNA |
| 2509761 | 2510058 | - | 298 | 114319166 | Mlg_R0048 | - | RNA component of RNaseP |
| 2543728 | 2543801 | - | 74 | 114319166 | Mlg_R0049 | - | 05 Gln tRNA |
| 2591270 | 2591346 | - | 77 | 114319166 | Mlg_R0050 | - | 06 Asp tRNA |
| 2591360 | 2591435 | - | 76 | 114319166 | Mlg_R0051 | - | 13 Val tRNA |
| 2598588 | 2598674 | - | 87 | 114319166 | Mlg_R0052 | - | 15 Leu tRNA |
| 2859072 | 2859148 | - | 77 | 114319166 | Mlg_R0053 | - | 16 Met tRNA |
| 3044231 | 3044307 | - | 77 | 114319166 | Mlg_R0054 | - | 11 Arg tRNA |
| 3058396 | 3058471 | + | 76 | 114319166 | Mlg_R0055 | - | 17 Phe tRNA |
| 3081898 | 3081974 | - | 77 | 114319166 | Mlg_R0056 | - | 16 Met tRNA |

