Геном прокариот/Материалы:NC 008497
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LOCUS NC_008497 2291220 bp DNA circular BCT 31-OCT-2006
DEFINITION Lactobacillus brevis ATCC 367, complete genome.
ACCESSION NC_008497
VERSION NC_008497.1 GI:116332681
KEYWORDS .
SOURCE Lactobacillus brevis ATCC 367
ORGANISM Lactobacillus brevis ATCC 367
Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
Lactobacillus.
REFERENCE 1 (bases 1 to 2291220)
AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
Kozyavkin,S., Weimer,B. and Mills,D.
TITLE Comparative genomics of the lactic acid bacteria
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
PUBMED 17030793
REFERENCE 2 (bases 1 to 2291220)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2291220)
AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Genome Consortium and Fidelity Systems Inc.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000416.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2662178
Source DNA and bacteria available from Milton Saier
(msaier@ucsd.edu)
Bacteria also available from ATCC: ATCC 367
Contacts: Milton Saier (msaier@ucsd.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Annotation done by Kira Makarova and Eugene Koonin
Finishing done by Fidelity Systems Inc. (Gaithersburg)URL --
http://www.fidelitysystems.com
Project Information available at:
http://genome.jgi-psf.org/mic_home.html
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 31448 | 31523 | - | 76 | 116332681 | LVIS_t0028 | - | 10 Lys tRNA |
| 76914 | 76986 | + | 73 | 116332681 | LVIS_t0073 | - | 04 Glu tRNA |
| 76996 | 77067 | + | 72 | 116332681 | LVIS_t0074 | - | 05 Gln tRNA |
| 86149 | 87711 | + | 1563 | 116332681 | LVIS_r0082 | - | 16S ribosomal RNA |
| 87928 | 90845 | + | 2918 | 116332681 | LVIS_r0083 | - | 23S ribosomal RNA |
| 90914 | 91032 | + | 119 | 116332681 | LVIS_r0084 | - | 5S ribosomal RNA |
| 453214 | 454776 | + | 1563 | 116332681 | LVIS_r0425 | - | 16S ribosomal RNA |
| 454993 | 457910 | + | 2918 | 116332681 | LVIS_r0426 | - | 23S ribosomal RNA |
| 457979 | 458097 | + | 119 | 116332681 | LVIS_r0427 | - | 5S ribosomal RNA |
| 458170 | 458242 | + | 73 | 116332681 | LVIS_t0428 | - | 12 Thr tRNA |
| 562993 | 564555 | + | 1563 | 116332681 | LVIS_r0526 | - | 16S ribosomal RNA |
| 564635 | 564709 | + | 75 | 116332681 | LVIS_t0527 | - | 14 Ile tRNA |
| 564732 | 564804 | + | 73 | 116332681 | LVIS_t0528 | - | 02 Ala tRNA |
| 564974 | 567891 | + | 2918 | 116332681 | LVIS_r0529 | - | 23S ribosomal RNA |
| 567960 | 568078 | + | 119 | 116332681 | LVIS_r0530 | - | 5S ribosomal RNA |
| 568083 | 568155 | + | 73 | 116332681 | LVIS_t0531 | - | 07 Asn tRNA |
| 568187 | 568262 | + | 76 | 116332681 | LVIS_t0532 | - | 12 Thr tRNA |
| 571607 | 571689 | + | 83 | 116332681 | LVIS_t0536 | - | 18 Tyr tRNA |
| 571699 | 571773 | + | 75 | 116332681 | LVIS_t0537 | - | 05 Gln tRNA |
| 582938 | 583022 | + | 85 | 116332681 | LVIS_t0549 | - | 15 Leu tRNA |
| 686104 | 686178 | + | 75 | 116332681 | LVIS_t0657 | - | 11 Arg tRNA |
| 686979 | 687050 | + | 72 | 116332681 | LVIS_t0659 | - | 11 Arg tRNA |
| 874659 | 874999 | - | 341 | 116332681 | LVIS_r0847 | - | RNA_RNaseP_classB |
| 1118040 | 1118112 | - | 73 | 116332681 | LVIS_t1109 | - | Xaa tRNA |
| 1118275 | 1118332 | - | 58 | 116332681 | LVIS_t1110 | - | Xaa tRNA |
| 1118379 | 1118461 | - | 83 | 116332681 | LVIS_t1111 | - | 18 Tyr tRNA |
| 1141829 | 1141903 | - | 75 | 116332681 | LVIS_t1152 | - | 06 Asp tRNA |
| 1141909 | 1141982 | - | 74 | 116332681 | LVIS_t1153 | - | 16 Met tRNA |
| 1142003 | 1142075 | - | 73 | 116332681 | LVIS_t1154 | - | 04 Glu tRNA |
| 1142083 | 1142170 | - | 88 | 116332681 | LVIS_t1155 | - | 08 Ser tRNA |
| 1142175 | 1142249 | - | 75 | 116332681 | LVIS_t1156 | - | 14 Ile tRNA |
| 1142256 | 1142326 | - | 71 | 116332681 | LVIS_t1157 | - | 01 Gly tRNA |
| 1142342 | 1142414 | - | 73 | 116332681 | LVIS_t1158 | - | 17 Phe tRNA |
| 1142467 | 1142541 | - | 75 | 116332681 | LVIS_t1159 | - | 06 Asp tRNA |
| 1142547 | 1142620 | - | 74 | 116332681 | LVIS_t1160 | - | 16 Met tRNA |
| 1142631 | 1142720 | - | 90 | 116332681 | LVIS_t1161 | - | 08 Ser tRNA |
| 1142754 | 1142827 | - | 74 | 116332681 | LVIS_t1162 | - | 16 Met tRNA |
| 1142842 | 1142915 | - | 74 | 116332681 | LVIS_t1163 | - | 16 Met tRNA |
| 1142942 | 1143015 | - | 74 | 116332681 | LVIS_t1164 | - | 03 Pro tRNA |
| 1143022 | 1143095 | - | 74 | 116332681 | LVIS_t1165 | - | 11 Arg tRNA |
| 1143128 | 1143199 | - | 72 | 116332681 | LVIS_t1166 | - | 01 Gly tRNA |
| 1143205 | 1143277 | - | 73 | 116332681 | LVIS_t1167 | - | 12 Thr tRNA |
| 1143327 | 1143399 | - | 73 | 116332681 | LVIS_t1168 | - | 10 Lys tRNA |
| 1143403 | 1143475 | - | 73 | 116332681 | LVIS_t1169 | - | 13 Val tRNA |
| 1143481 | 1143599 | - | 119 | 116332681 | LVIS_r1170 | - | 5S ribosomal RNA |
| 1143668 | 1146585 | - | 2918 | 116332681 | LVIS_r1171 | - | 23S ribosomal RNA |
| 1146802 | 1148364 | - | 1563 | 116332681 | LVIS_r1172 | - | 16S ribosomal RNA |
| 1277086 | 1277161 | - | 76 | 116332681 | LVIS_t1305 | - | 05 Gln tRNA |
| 1277341 | 1277414 | + | 74 | 116332681 | LVIS_t1306 | - | 04 Glu tRNA |
| 1289472 | 1289843 | + | 372 | 116332681 | LVIS_s1317 | - | tmRNA |
| 1341522 | 1341609 | - | 88 | 116332681 | LVIS_t1370 | - | 08 Ser tRNA |
| 1464858 | 1464928 | - | 71 | 116332681 | LVIS_t1492 | - | 01 Gly tRNA |
| 1482583 | 1482666 | - | 84 | 116332681 | LVIS_t1510 | - | 15 Leu tRNA |
| 1500095 | 1500179 | - | 85 | 116332681 | LVIS_t1530 | - | 15 Leu tRNA |
| 1500214 | 1500284 | - | 71 | 116332681 | LVIS_t1531 | - | 19 Cys tRNA |
| 1500339 | 1500414 | - | 76 | 116332681 | LVIS_t1532 | - | 09 His tRNA |
| 1500428 | 1500498 | - | 71 | 116332681 | LVIS_t1533 | - | 20 Trp tRNA |
| 1500500 | 1500585 | - | 86 | 116332681 | LVIS_t1534 | - | 18 Tyr tRNA |
| 1500590 | 1500662 | - | 73 | 116332681 | LVIS_t1535 | - | 17 Phe tRNA |
| 1500710 | 1500784 | - | 75 | 116332681 | LVIS_t1536 | - | 06 Asp tRNA |
| 1500804 | 1500876 | - | 73 | 116332681 | LVIS_t1537 | - | 13 Val tRNA |
| 1500881 | 1500953 | - | 73 | 116332681 | LVIS_t1538 | - | 04 Glu tRNA |
| 1500967 | 1501057 | - | 91 | 116332681 | LVIS_t1539 | - | 08 Ser tRNA |
| 1501067 | 1501139 | - | 73 | 116332681 | LVIS_t1540 | - | 07 Asn tRNA |
| 1501144 | 1501262 | - | 119 | 116332681 | LVIS_r1541 | - | 5S ribosomal RNA |
| 1501331 | 1504248 | - | 2918 | 116332681 | LVIS_r1542 | - | 23S ribosomal RNA |
| 1504418 | 1504490 | - | 73 | 116332681 | LVIS_t1543 | - | 02 Ala tRNA |
| 1504513 | 1504587 | - | 75 | 116332681 | LVIS_t1544 | - | 14 Ile tRNA |
| 1504667 | 1506229 | - | 1563 | 116332681 | LVIS_r1545 | - | 16S ribosomal RNA |
| 1544596 | 1544668 | - | 73 | 116332681 | LVIS_t1579 | - | 11 Arg tRNA |
| 1664631 | 1664704 | - | 74 | 116332681 | LVIS_t1702 | - | 03 Pro tRNA |
| 1664733 | 1664806 | - | 74 | 116332681 | LVIS_t1703 | - | 03 Pro tRNA |
| 1664841 | 1664914 | - | 74 | 116332681 | LVIS_t1704 | - | 11 Arg tRNA |
| 1664935 | 1665020 | - | 86 | 116332681 | LVIS_t1705 | - | 15 Leu tRNA |
| 1665031 | 1665102 | - | 72 | 116332681 | LVIS_t1706 | - | 01 Gly tRNA |
| 1665129 | 1665201 | - | 73 | 116332681 | LVIS_t1707 | - | 12 Thr tRNA |
| 1665239 | 1665320 | - | 82 | 116332681 | LVIS_t1708 | - | 15 Leu tRNA |
| 1665358 | 1665430 | - | 73 | 116332681 | LVIS_t1709 | - | 13 Val tRNA |
| 1801928 | 1802000 | + | 73 | 116332681 | LVIS_t1841 | - | 02 Ala tRNA |
| 1895453 | 1895526 | - | 74 | 116332681 | LVIS_t1937 | - | 11 Arg tRNA |
| 2091276 | 2091347 | - | 72 | 116332681 | LVIS_t2126 | - | 11 Arg tRNA |
| 2113225 | 2113296 | - | 72 | 116332681 | LVIS_t2146 | - | 05 Gln tRNA |

