Геном прокариот/Материалы:NC 008525
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LOCUS NC_008525 1832387 bp DNA circular BCT 31-OCT-2006
DEFINITION Pediococcus pentosaceus ATCC 25745, complete genome.
ACCESSION NC_008525
VERSION NC_008525.1 GI:116491818
KEYWORDS .
SOURCE Pediococcus pentosaceus ATCC 25745
ORGANISM Pediococcus pentosaceus ATCC 25745
Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
Pediococcus.
REFERENCE 1 (bases 1 to 1832387)
AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
Kozyavkin,S., Weimer,B. and Mills,D.
TITLE Comparative genomics of the lactic acid bacteria
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
PUBMED 17030793
REFERENCE 2 (bases 1 to 1832387)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1832387)
AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Genome Consortium and Fidelity Systems Inc.
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000422.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2662186
Source DNA and bacteria available from Jeffery R. Broadbent
(broadbnt@cc.usu.edu)
Bacteria also available from ATCC: ATCC 25745
Contacts: Jeffery R. Broadbent (broadbnt@cc.usu.edu)
James L. Steele (jlsteele@facstaff.wisc.edu)
David Mills (damills@ucdavis.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Annotation done by Kira Makarova and Eugene Koonin
Finishing done by Fidelity Systems Inc. (Gaithersburg)
URL -- http://www.fidelitysystems.com Project Information
available at: http://genome.jgi-psf.org/mic_home.html
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 107547 | 107619 | - | 73 | 116491818 | PEPE_t0098 | - | 02 Ala tRNA |
| 116896 | 118475 | + | 1580 | 116491818 | PEPE_r0108 | - | 16S ribosomal RNA |
| 118704 | 121626 | + | 2923 | 116491818 | PEPE_r0109 | - | 23S ribosomal RNA |
| 121720 | 121836 | + | 117 | 116491818 | PEPE_r0110 | - | 5S ribosomal RNA |
| 277878 | 279458 | + | 1581 | 116491818 | PEPE_r0236 | - | 16S ribosomal RNA |
| 279687 | 282609 | + | 2923 | 116491818 | PEPE_r0237 | - | 23S ribosomal RNA |
| 282703 | 282819 | + | 117 | 116491818 | PEPE_r0238 | - | 5S ribosomal RNA |
| 282936 | 283009 | + | 74 | 116491818 | PEPE_t0239 | - | 12 Thr tRNA |
| 509466 | 509537 | - | 72 | 116491818 | PEPE_t0456 | - | 11 Arg tRNA |
| 600255 | 600623 | - | 369 | 116491818 | PEPE_s0541 | - | tmRNA |
| 649284 | 649357 | - | 74 | 116491818 | PEPE_t0594 | - | 11 Arg tRNA |
| 671638 | 673217 | + | 1580 | 116491818 | PEPE_r0615 | - | 16S ribosomal RNA |
| 673294 | 673368 | + | 75 | 116491818 | PEPE_t0616 | - | 14 Ile tRNA |
| 673374 | 673446 | + | 73 | 116491818 | PEPE_t0617 | - | 02 Ala tRNA |
| 673635 | 676557 | + | 2923 | 116491818 | PEPE_r0618 | - | 23S ribosomal RNA |
| 676652 | 676768 | + | 117 | 116491818 | PEPE_r0619 | - | 5S ribosomal RNA |
| 676774 | 676846 | + | 73 | 116491818 | PEPE_t0620 | - | 13 Val tRNA |
| 676856 | 676928 | + | 73 | 116491818 | PEPE_t0621 | - | 10 Lys tRNA |
| 676988 | 677060 | + | 73 | 116491818 | PEPE_t0622 | - | 12 Thr tRNA |
| 677071 | 677142 | + | 72 | 116491818 | PEPE_t0623 | - | 01 Gly tRNA |
| 677175 | 677260 | + | 86 | 116491818 | PEPE_t0624 | - | 15 Leu tRNA |
| 677269 | 677342 | + | 74 | 116491818 | PEPE_t0625 | - | 11 Arg tRNA |
| 677352 | 677425 | + | 74 | 116491818 | PEPE_t0626 | - | 03 Pro tRNA |
| 677465 | 677538 | + | 74 | 116491818 | PEPE_t0627 | - | 16 Met tRNA |
| 677559 | 677632 | + | 74 | 116491818 | PEPE_t0628 | - | 16 Met tRNA |
| 677679 | 677768 | + | 90 | 116491818 | PEPE_t0629 | - | 08 Ser tRNA |
| 677778 | 677851 | + | 74 | 116491818 | PEPE_t0630 | - | 16 Met tRNA |
| 677856 | 677929 | + | 74 | 116491818 | PEPE_t0631 | - | 06 Asp tRNA |
| 677935 | 678007 | + | 73 | 116491818 | PEPE_t0632 | - | 17 Phe tRNA |
| 678032 | 678102 | + | 71 | 116491818 | PEPE_t0633 | - | 01 Gly tRNA |
| 678121 | 678195 | + | 75 | 116491818 | PEPE_t0634 | - | 14 Ile tRNA |
| 678199 | 678286 | + | 88 | 116491818 | PEPE_t0635 | - | 08 Ser tRNA |
| 678310 | 678384 | + | 75 | 116491818 | PEPE_t0636 | - | 04 Glu tRNA |
| 678415 | 678488 | + | 74 | 116491818 | PEPE_t0637 | - | 16 Met tRNA |
| 678493 | 678566 | + | 74 | 116491818 | PEPE_t0638 | - | 06 Asp tRNA |
| 695336 | 695419 | + | 84 | 116491818 | PEPE_t0656 | - | 15 Leu tRNA |
| 705141 | 705214 | + | 74 | 116491818 | PEPE_t0665 | - | 01 Gly tRNA |
| 818739 | 818812 | - | 74 | 116491818 | PEPE_t0808 | - | 11 Arg tRNA |
| 936650 | 936983 | + | 334 | 116491818 | PEPE_r0935 | - | RNA_RNaseP_classB |
| 1127365 | 1127452 | + | 88 | 116491818 | PEPE_t1128 | - | 08 Ser tRNA |
| 1209541 | 1209611 | - | 71 | 116491818 | PEPE_t1211 | - | 19 Cys tRNA |
| 1209696 | 1209779 | - | 84 | 116491818 | PEPE_t1212 | - | 15 Leu tRNA |
| 1209827 | 1209899 | - | 73 | 116491818 | PEPE_t1213 | - | 09 His tRNA |
| 1209905 | 1209978 | - | 74 | 116491818 | PEPE_t1214 | - | 20 Trp tRNA |
| 1210023 | 1210095 | - | 73 | 116491818 | PEPE_t1215 | - | 17 Phe tRNA |
| 1210118 | 1210191 | - | 74 | 116491818 | PEPE_t1216 | - | 06 Asp tRNA |
| 1210210 | 1210282 | - | 73 | 116491818 | PEPE_t1217 | - | 13 Val tRNA |
| 1210290 | 1210361 | - | 72 | 116491818 | PEPE_t1218 | - | 04 Glu tRNA |
| 1210380 | 1210471 | - | 92 | 116491818 | PEPE_t1219 | - | 08 Ser tRNA |
| 1210484 | 1210556 | - | 73 | 116491818 | PEPE_t1220 | - | 07 Asn tRNA |
| 1210562 | 1210679 | - | 118 | 116491818 | PEPE_r1221 | - | 5S ribosomal RNA |
| 1210773 | 1213695 | - | 2923 | 116491818 | PEPE_r1222 | - | 23S ribosomal RNA |
| 1213924 | 1215503 | - | 1580 | 116491818 | PEPE_r1223 | - | 16S ribosomal RNA |
| 1330717 | 1330789 | + | 73 | 116491818 | PEPE_t1341 | - | 04 Glu tRNA |
| 1330798 | 1330873 | + | 76 | 116491818 | PEPE_t1342 | - | 05 Gln tRNA |
| 1409267 | 1409340 | - | 74 | 116491818 | PEPE_t1429 | - | 03 Pro tRNA |
| 1409431 | 1409504 | - | 74 | 116491818 | PEPE_t1430 | - | 11 Arg tRNA |
| 1409526 | 1409597 | - | 72 | 116491818 | PEPE_t1431 | - | 01 Gly tRNA |
| 1409602 | 1409674 | - | 73 | 116491818 | PEPE_t1432 | - | 12 Thr tRNA |
| 1409687 | 1409768 | - | 82 | 116491818 | PEPE_t1433 | - | 15 Leu tRNA |
| 1409811 | 1409883 | - | 73 | 116491818 | PEPE_t1434 | - | 13 Val tRNA |
| 1487116 | 1487204 | - | 89 | 116491818 | PEPE_t1519 | - | 15 Leu tRNA |
| 1499426 | 1499497 | - | 72 | 116491818 | PEPE_t1530 | - | 05 Gln tRNA |
| 1499501 | 1499586 | - | 86 | 116491818 | PEPE_t1531 | - | 18 Tyr tRNA |
| 1502655 | 1502727 | - | 73 | 116491818 | PEPE_t1535 | - | 12 Thr tRNA |
| 1502776 | 1502848 | - | 73 | 116491818 | PEPE_t1536 | - | 07 Asn tRNA |
| 1502854 | 1502971 | - | 118 | 116491818 | PEPE_r1537 | - | 5S ribosomal RNA |
| 1503065 | 1505987 | - | 2923 | 116491818 | PEPE_r1538 | - | 23S ribosomal RNA |
| 1506176 | 1506248 | - | 73 | 116491818 | PEPE_t1539 | - | 02 Ala tRNA |
| 1506254 | 1506328 | - | 75 | 116491818 | PEPE_t1540 | - | 14 Ile tRNA |
| 1506405 | 1507984 | - | 1580 | 116491818 | PEPE_r1541 | - | 16S ribosomal RNA |
| 1777594 | 1777669 | + | 76 | 116491818 | PEPE_t1798 | - | 10 Lys tRNA |

