Геном прокариот/Материалы:NC 008526
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LOCUS NC_008526 2895264 bp DNA circular BCT 14-AUG-2007
DEFINITION Lactobacillus casei ATCC 334, complete genome.
ACCESSION NC_008526
VERSION NC_008526.1 GI:116493574
KEYWORDS .
SOURCE Lactobacillus casei ATCC 334
ORGANISM Lactobacillus casei ATCC 334
Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
Lactobacillus.
REFERENCE 1 (bases 1 to 2895264)
AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
Kozyavkin,S., Weimer,B. and Mills,D.
TITLE Comparative genomics of the lactic acid bacteria
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
PUBMED 17030793
REFERENCE 2 (bases 1 to 2895264)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2895264)
AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Genome Consortium and Fidelity Systems Inc.
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000423.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2662185
Source DNA and bacteria available from Jeffery R. Broadbent
(broadbnt@cc.usu.edu)
Bacteria also available from ATCC: ATCC 334
Contacts: Jeffery R. Broadbent (broadbnt@cc.usu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Annotation done by Kira Makarova and Eugene Koonin
Finishing done by Fidelity Systems Inc. (Gaithersburg)
URL -- http://www.fidelitysystems.com Project Information
available at: http://genome.jgi-psf.org/mic_home.html
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 259505 | 261078 | + | 1574 | 116493574 | LSEI_r0258 | - | 16S ribosomal RNA |
| 261295 | 264214 | + | 2920 | 116493574 | LSEI_r0259 | - | 23S ribosomal RNA |
| 264412 | 264531 | + | 120 | 116493574 | LSEI_r0260 | - | 5S ribosomal RNA |
| 501060 | 501131 | + | 72 | 116493574 | LSEI_t0485 | - | 11 Arg tRNA |
| 722753 | 722825 | - | 73 | 116493574 | LSEI_t0719 | - | 02 Ala tRNA |
| 722847 | 722919 | - | 73 | 116493574 | LSEI_t0720 | - | 02 Ala tRNA |
| 823774 | 825347 | + | 1574 | 116493574 | LSEI_r0829 | - | 16S ribosomal RNA |
| 825564 | 828483 | + | 2920 | 116493574 | LSEI_r0830 | - | 23S ribosomal RNA |
| 828679 | 828798 | + | 120 | 116493574 | LSEI_r0831 | - | 5S ribosomal RNA |
| 828803 | 828875 | + | 73 | 116493574 | LSEI_t0832 | - | 13 Val tRNA |
| 828878 | 828950 | + | 73 | 116493574 | LSEI_t0833 | - | 10 Lys tRNA |
| 828992 | 829064 | + | 73 | 116493574 | LSEI_t0834 | - | 12 Thr tRNA |
| 829098 | 829169 | + | 72 | 116493574 | LSEI_t0835 | - | 01 Gly tRNA |
| 829230 | 829303 | + | 74 | 116493574 | LSEI_t0836 | - | 11 Arg tRNA |
| 829308 | 829381 | + | 74 | 116493574 | LSEI_t0837 | - | 03 Pro tRNA |
| 829408 | 829481 | + | 74 | 116493574 | LSEI_t0838 | - | 16 Met tRNA |
| 829490 | 829563 | + | 74 | 116493574 | LSEI_t0839 | - | 16 Met tRNA |
| 829612 | 829685 | + | 74 | 116493574 | LSEI_t0840 | - | 16 Met tRNA |
| 829693 | 829766 | + | 74 | 116493574 | LSEI_t0841 | - | 06 Asp tRNA |
| 829772 | 829844 | + | 73 | 116493574 | LSEI_t0842 | - | 17 Phe tRNA |
| 829864 | 829934 | + | 71 | 116493574 | LSEI_t0843 | - | 01 Gly tRNA |
| 829949 | 830022 | + | 74 | 116493574 | LSEI_t0844 | - | 14 Ile tRNA |
| 830052 | 830139 | + | 88 | 116493574 | LSEI_t0845 | - | 08 Ser tRNA |
| 830144 | 830215 | + | 72 | 116493574 | LSEI_t0846 | - | 04 Glu tRNA |
| 830225 | 830316 | + | 92 | 116493574 | LSEI_t0847 | - | 08 Ser tRNA |
| 830327 | 830400 | + | 74 | 116493574 | LSEI_t0848 | - | 16 Met tRNA |
| 830408 | 830481 | + | 74 | 116493574 | LSEI_t0849 | - | 06 Asp tRNA |
| 830525 | 830597 | + | 73 | 116493574 | LSEI_t0850 | - | 17 Phe tRNA |
| 830602 | 830682 | + | 81 | 116493574 | LSEI_t0851 | - | 18 Tyr tRNA |
| 830689 | 830759 | + | 71 | 116493574 | LSEI_t0852 | - | 20 Trp tRNA |
| 830771 | 830843 | + | 73 | 116493574 | LSEI_t0853 | - | 09 His tRNA |
| 830852 | 830923 | + | 72 | 116493574 | LSEI_t0854 | - | 05 Gln tRNA |
| 830966 | 831036 | + | 71 | 116493574 | LSEI_t0855 | - | 19 Cys tRNA |
| 831083 | 831169 | + | 87 | 116493574 | LSEI_t0856 | - | 15 Leu tRNA |
| 845524 | 847097 | + | 1574 | 116493574 | LSEI_r0870 | - | 16S ribosomal RNA |
| 847314 | 850233 | + | 2920 | 116493574 | LSEI_r0871 | - | 23S ribosomal RNA |
| 850429 | 850548 | + | 120 | 116493574 | LSEI_r0872 | - | 5S ribosomal RNA |
| 850554 | 850626 | + | 73 | 116493574 | LSEI_t0873 | - | 07 Asn tRNA |
| 850635 | 850724 | + | 90 | 116493574 | LSEI_t0874 | - | 08 Ser tRNA |
| 850979 | 851051 | + | 73 | 116493574 | LSEI_t0875 | - | 13 Val tRNA |
| 866026 | 866109 | + | 84 | 116493574 | LSEI_t0890 | - | 15 Leu tRNA |
| 946267 | 946338 | + | 72 | 116493574 | LSEI_t0964 | - | 11 Arg tRNA |
| 1024479 | 1024842 | - | 364 | 116493574 | LSEI_s1039 | - | tmRNA |
| 1064149 | 1064222 | + | 74 | 116493574 | LSEI_t1079 | - | 11 Arg tRNA |
| 1122160 | 1122231 | + | 72 | 116493574 | LSEI_t1137 | - | 04 Glu tRNA |
| 1127856 | 1127926 | + | 71 | 116493574 | LSEI_t1143 | - | 05 Gln tRNA |
| 1471442 | 1471768 | - | 327 | 116493574 | LSEI_r1477 | - | RNA_RNaseP_classB |
| 1545912 | 1545999 | + | 88 | 116493574 | LSEI_t1551 | - | 08 Ser tRNA |
| 1644325 | 1644398 | - | 74 | 116493574 | LSEI_t1650 | - | 11 Arg tRNA |
| 1724380 | 1724450 | - | 71 | 116493574 | LSEI_t1729 | - | 01 Gly tRNA |
| 1787305 | 1787393 | + | 89 | 116493574 | LSEI_t1794 | - | 15 Leu tRNA |
| 1806618 | 1806698 | - | 81 | 116493574 | LSEI_t1811 | - | 18 Tyr tRNA |
| 1823054 | 1823126 | - | 73 | 116493574 | LSEI_t1825 | - | 12 Thr tRNA |
| 1823131 | 1823202 | - | 72 | 116493574 | LSEI_t1826 | - | 04 Glu tRNA |
| 1825412 | 1825484 | - | 73 | 116493574 | LSEI_t1830 | - | 07 Asn tRNA |
| 1825492 | 1825611 | - | 120 | 116493574 | LSEI_r1831 | - | 5S ribosomal RNA |
| 1825733 | 1828652 | - | 2920 | 116493574 | LSEI_r1832 | - | 23S ribosomal RNA |
| 1828811 | 1828883 | - | 73 | 116493574 | LSEI_t1833 | - | 02 Ala tRNA |
| 1828915 | 1828991 | - | 77 | 116493574 | LSEI_t1834 | - | 14 Ile tRNA |
| 1829077 | 1830650 | - | 1574 | 116493574 | LSEI_r1835 | - | 16S ribosomal RNA |
| 2217604 | 2217675 | - | 72 | 116493574 | LSEI_t2224 | - | 07 Asn tRNA |
| 2499939 | 2500012 | - | 74 | 116493574 | LSEI_t2519 | - | 03 Pro tRNA |
| 2500017 | 2500088 | - | 72 | 116493574 | LSEI_t2520 | - | 01 Gly tRNA |
| 2500135 | 2500211 | - | 77 | 116493574 | LSEI_t2521 | - | 11 Arg tRNA |
| 2500223 | 2500308 | - | 86 | 116493574 | LSEI_t2522 | - | 15 Leu tRNA |
| 2500320 | 2500391 | - | 72 | 116493574 | LSEI_t2523 | - | 01 Gly tRNA |
| 2500467 | 2500549 | - | 83 | 116493574 | LSEI_t2524 | - | 15 Leu tRNA |
| 2500567 | 2500639 | - | 73 | 116493574 | LSEI_t2525 | - | 10 Lys tRNA |
| 2500642 | 2500714 | - | 73 | 116493574 | LSEI_t2526 | - | 13 Val tRNA |
| 2500721 | 2500840 | - | 120 | 116493574 | LSEI_r2527 | - | 5S ribosomal RNA |
| 2501036 | 2503955 | - | 2920 | 116493574 | LSEI_r2528 | - | 23S ribosomal RNA |
| 2504114 | 2504186 | - | 73 | 116493574 | LSEI_t2529 | - | 02 Ala tRNA |
| 2504218 | 2504294 | - | 77 | 116493574 | LSEI_t2530 | - | 14 Ile tRNA |
| 2504380 | 2505953 | - | 1574 | 116493574 | LSEI_r2531 | - | 16S ribosomal RNA |
| 2620404 | 2620476 | - | 73 | 116493574 | LSEI_t2634 | - | 12 Thr tRNA |
| 2861966 | 2862038 | - | 73 | 116493574 | LSEI_t2881 | - | 10 Lys tRNA |

