Геном прокариот/Материалы:NC 008527
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LOCUS NC_008527 2438589 bp DNA circular BCT 14-FEB-2007
DEFINITION Lactococcus lactis subsp. cremoris SK11, complete genome.
ACCESSION NC_008527
VERSION NC_008527.1 GI:116510843
KEYWORDS .
SOURCE Lactococcus lactis subsp. cremoris SK11
ORGANISM Lactococcus lactis subsp. cremoris SK11
Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
Lactococcus.
REFERENCE 1 (bases 1 to 2438589)
AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
Kozyavkin,S., Weimer,B. and Mills,D.
TITLE Comparative genomics of the lactic acid bacteria
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
PUBMED 17030793
REFERENCE 2 (bases 1 to 2438589)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2438589)
AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Genome Consortium and Fidelity Systems Inc.
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000425.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2662180
Source DNA and bacteria available from Bart Weimer
(milkbugs@cc.usu.edu)
Contacts: Bart Weimer (milkbugs@cc.usu.edu)
Larry McKay (lmckay@umn.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Annotation done by Kira Makarova and Eugene Koonin
Finishing done by Fidelity Systems Inc. (Gaithersburg)URL --
http://www.fidelitysystems.com
Project Information available at:
http://genome.jgi-psf.org/mic_home.html
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 25190 | 25261 | + | 72 | 116510843 | LACR_t0019 | - | 04 Glu tRNA |
| 25267 | 25356 | + | 90 | 116510843 | LACR_t0020 | - | 08 Ser tRNA |
| 25367 | 25440 | + | 74 | 116510843 | LACR_t0021 | - | 16 Met tRNA |
| 25446 | 25518 | + | 73 | 116510843 | LACR_t0022 | - | 17 Phe tRNA |
| 25530 | 25600 | + | 71 | 116510843 | LACR_t0023 | - | 01 Gly tRNA |
| 25615 | 25688 | + | 74 | 116510843 | LACR_t0024 | - | 14 Ile tRNA |
| 25709 | 25791 | + | 83 | 116510843 | LACR_r0025 | - | 5S ribosomal RNA |
| 25813 | 25886 | + | 74 | 116510843 | LACR_t0026 | - | 07 Asn tRNA |
| 40828 | 40900 | + | 73 | 116510843 | LACR_t0045 | - | 10 Lys tRNA |
| 100707 | 100795 | - | 89 | 116510843 | LACR_t0108 | - | 15 Leu tRNA |
| 113775 | 113861 | - | 87 | 116510843 | LACR_t0124 | - | 08 Ser tRNA |
| 145002 | 145077 | - | 76 | 116510843 | LACR_t0158 | - | 12 Thr tRNA |
| 242931 | 243019 | - | 89 | 116510843 | LACR_t0261 | - | 15 Leu tRNA |
| 266943 | 267030 | - | 88 | 116510843 | LACR_t0287 | - | 08 Ser tRNA |
| 275529 | 275602 | + | 74 | 116510843 | LACR_t0296 | - | 11 Arg tRNA |
| 275665 | 275738 | + | 74 | 116510843 | LACR_t0297 | - | 03 Pro tRNA |
| 442168 | 442238 | + | 71 | 116510843 | LACR_t0471 | - | 19 Cys tRNA |
| 466065 | 466138 | + | 74 | 116510843 | LACR_t0490 | - | 11 Arg tRNA |
| 518197 | 519744 | + | 1548 | 116510843 | LACR_r0552 | - | 16S ribosomal RNA |
| 519838 | 519910 | + | 73 | 116510843 | LACR_t0553 | - | 02 Ala tRNA |
| 520049 | 522949 | + | 2901 | 116510843 | LACR_r0554 | - | 23S ribosomal RNA |
| 523033 | 523148 | + | 116 | 116510843 | LACR_r0555 | - | 5S ribosomal RNA |
| 523151 | 523223 | + | 73 | 116510843 | LACR_t0556 | - | 13 Val tRNA |
| 523253 | 523325 | + | 73 | 116510843 | LACR_t0557 | - | 06 Asp tRNA |
| 523343 | 523415 | + | 73 | 116510843 | LACR_t0558 | - | 10 Lys tRNA |
| 523425 | 523506 | + | 82 | 116510843 | LACR_t0559 | - | 15 Leu tRNA |
| 523520 | 523592 | + | 73 | 116510843 | LACR_t0560 | - | 12 Thr tRNA |
| 523618 | 523689 | + | 72 | 116510843 | LACR_t0561 | - | 01 Gly tRNA |
| 523728 | 523801 | + | 74 | 116510843 | LACR_t0562 | - | 11 Arg tRNA |
| 523807 | 523880 | + | 74 | 116510843 | LACR_t0563 | - | 03 Pro tRNA |
| 523918 | 523991 | + | 74 | 116510843 | LACR_t0564 | - | 16 Met tRNA |
| 524004 | 524077 | + | 74 | 116510843 | LACR_t0565 | - | 16 Met tRNA |
| 524085 | 524157 | + | 73 | 116510843 | LACR_t0566 | - | 17 Phe tRNA |
| 524168 | 524238 | + | 71 | 116510843 | LACR_t0567 | - | 01 Gly tRNA |
| 524264 | 524337 | + | 74 | 116510843 | LACR_t0568 | - | 14 Ile tRNA |
| 524380 | 524467 | + | 88 | 116510843 | LACR_t0569 | - | 08 Ser tRNA |
| 593652 | 593723 | + | 72 | 116510843 | LACR_t0650 | - | 11 Arg tRNA |
| 595838 | 595913 | + | 76 | 116510843 | LACR_t0653 | - | 10 Lys tRNA |
| 701024 | 701097 | + | 74 | 116510843 | LACR_t0753 | - | 16 Met tRNA |
| 1050871 | 1050941 | + | 71 | 116510843 | LACR_t1131 | - | 10 Lys tRNA |
| 1442402 | 1442760 | - | 359 | 116510843 | LACR_s1521 | - | tmRNA |
| 1662594 | 1662654 | - | 61 | 116510843 | LACR_t1753 | - | Xaa tRNA |
| 1701366 | 1701437 | - | 72 | 116510843 | LACR_t1806 | - | 05 Gln tRNA |
| 1712611 | 1712953 | - | 343 | 116510843 | LACR_r1817 | - | RNA_RNaseP_classB |
| 1722108 | 1722180 | + | 73 | 116510843 | LACR_t1827 | - | 11 Arg tRNA |
| 2037034 | 2037119 | - | 86 | 116510843 | LACR_t2169 | - | 15 Leu tRNA |
| 2037154 | 2037225 | - | 72 | 116510843 | LACR_t2170 | - | 01 Gly tRNA |
| 2037251 | 2037323 | - | 73 | 116510843 | LACR_t2171 | - | 12 Thr tRNA |
| 2037337 | 2037418 | - | 82 | 116510843 | LACR_t2172 | - | 15 Leu tRNA |
| 2037428 | 2037500 | - | 73 | 116510843 | LACR_t2173 | - | 10 Lys tRNA |
| 2037518 | 2037590 | - | 73 | 116510843 | LACR_t2174 | - | 06 Asp tRNA |
| 2037620 | 2037692 | - | 73 | 116510843 | LACR_t2175 | - | 13 Val tRNA |
| 2037695 | 2037810 | - | 116 | 116510843 | LACR_r2176 | - | 5S ribosomal RNA |
| 2037894 | 2040794 | - | 2901 | 116510843 | LACR_r2177 | - | 23S ribosomal RNA |
| 2040933 | 2041005 | - | 73 | 116510843 | LACR_t2178 | - | 02 Ala tRNA |
| 2041099 | 2042646 | - | 1548 | 116510843 | LACR_r2179 | - | 16S ribosomal RNA |
| 2215035 | 2215107 | - | 73 | 116510843 | LACR_t2373 | - | 12 Thr tRNA |
| 2277714 | 2277829 | - | 116 | 116510843 | LACR_r2448 | - | 5S ribosomal RNA |
| 2277913 | 2280813 | - | 2901 | 116510843 | LACR_r2449 | - | 23S ribosomal RNA |
| 2280952 | 2281024 | - | 73 | 116510843 | LACR_t2450 | - | 02 Ala tRNA |
| 2281118 | 2282665 | - | 1548 | 116510843 | LACR_r2451 | - | 16S ribosomal RNA |
| 2322623 | 2322738 | - | 116 | 116510843 | LACR_r2491 | - | 5S ribosomal RNA |
| 2322822 | 2325722 | - | 2901 | 116510843 | LACR_r2492 | - | 23S ribosomal RNA |
| 2325861 | 2325933 | - | 73 | 116510843 | LACR_t2493 | - | 02 Ala tRNA |
| 2326027 | 2327574 | - | 1548 | 116510843 | LACR_r2494 | - | 16S ribosomal RNA |
| 2354653 | 2354735 | - | 83 | 116510843 | LACR_t2523 | - | 15 Leu tRNA |
| 2396521 | 2396604 | - | 84 | 116510843 | LACR_t2563 | - | 15 Leu tRNA |
| 2396617 | 2396688 | - | 72 | 116510843 | LACR_t2564 | - | 05 Gln tRNA |
| 2396697 | 2396769 | - | 73 | 116510843 | LACR_t2565 | - | 09 His tRNA |
| 2396781 | 2396851 | - | 71 | 116510843 | LACR_t2566 | - | 20 Trp tRNA |
| 2396868 | 2396948 | - | 81 | 116510843 | LACR_t2567 | - | 18 Tyr tRNA |
| 2396984 | 2397056 | - | 73 | 116510843 | LACR_t2568 | - | 13 Val tRNA |
| 2397059 | 2397174 | - | 116 | 116510843 | LACR_r2569 | - | 5S ribosomal RNA |
| 2397258 | 2400158 | - | 2901 | 116510843 | LACR_r2570 | - | 23S ribosomal RNA |
| 2400297 | 2400369 | - | 73 | 116510843 | LACR_t2571 | - | 02 Ala tRNA |
| 2400463 | 2402010 | - | 1548 | 116510843 | LACR_r2572 | - | 16S ribosomal RNA |
| 2432785 | 2432858 | - | 74 | 116510843 | LACR_t2604 | - | 07 Asn tRNA |
| 2432895 | 2432966 | - | 72 | 116510843 | LACR_t2605 | - | 04 Glu tRNA |
| 2432976 | 2433091 | - | 116 | 116510843 | LACR_r2606 | - | 5S ribosomal RNA |
| 2433175 | 2436075 | - | 2901 | 116510843 | LACR_r2607 | - | 23S ribosomal RNA |
| 2436214 | 2436286 | - | 73 | 116510843 | LACR_t2608 | - | 02 Ala tRNA |
| 2436380 | 2437927 | - | 1548 | 116510843 | LACR_r2609 | - | 16S ribosomal RNA |

