Геном прокариот/Материалы:NC 008530
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LOCUS NC_008530 1894360 bp DNA circular BCT 31-OCT-2006
DEFINITION Lactobacillus gasseri ATCC 33323, complete genome.
ACCESSION NC_008530
VERSION NC_008530.1 GI:116628683
KEYWORDS .
SOURCE Lactobacillus gasseri ATCC 33323
ORGANISM Lactobacillus gasseri ATCC 33323
Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
Lactobacillus.
REFERENCE 1 (bases 1 to 1894360)
AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
Kozyavkin,S., Weimer,B. and Mills,D.
TITLE Comparative genomics of the lactic acid bacteria
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
PUBMED 17030793
REFERENCE 2 (bases 1 to 1894360)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1894360)
AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Genome Consortium and Fidelity Systems Inc.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000413.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2661979
Source DNA and bacteria available from Todd Klaenhammer
(trk@unity.ncsu.edu)
Bacteria also available from ATCC: ATCC 33323
Contacts: Todd Klaenhammer (trk@unity.ncsu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Annotation done by Kira Makarova and Eugene Koonin
Finishing done by Fidelity Systems Inc. (Gaithersburg)
URL -- http://www.fidelitysystems.com Project Information
available at: http://genome.jgi-psf.org/mic_home.html
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 20396 | 20468 | + | 73 | 116628683 | LGAS_t0018 | - | 12 Thr tRNA |
| 23614 | 23689 | + | 76 | 116628683 | LGAS_t0023 | - | 12 Thr tRNA |
| 77784 | 77856 | - | 73 | 116628683 | LGAS_t0062 | - | 10 Lys tRNA |
| 77982 | 78054 | - | 73 | 116628683 | LGAS_t0063 | - | 10 Lys tRNA |
| 213530 | 213602 | + | 73 | 116628683 | LGAS_t0178 | - | 12 Thr tRNA |
| 231930 | 232000 | - | 71 | 116628683 | LGAS_t0199 | - | 01 Gly tRNA |
| 318480 | 318554 | + | 75 | 116628683 | LGAS_t0281 | - | 01 Gly tRNA |
| 318595 | 318668 | + | 74 | 116628683 | LGAS_t0282 | - | 03 Pro tRNA |
| 477570 | 479148 | + | 1579 | 116628683 | LGAS_r0449 | - | 16S ribosomal RNA |
| 479701 | 482332 | + | 2632 | 116628683 | LGAS_r0450 | - | 23S ribosomal RNA |
| 482332 | 482450 | + | 119 | 116628683 | LGAS_r0451 | - | 5S ribosomal RNA |
| 482463 | 482535 | + | 73 | 116628683 | LGAS_t0452 | - | 07 Asn tRNA |
| 482558 | 482647 | + | 90 | 116628683 | LGAS_t0453 | - | 08 Ser tRNA |
| 482764 | 482835 | + | 72 | 116628683 | LGAS_t0454 | - | 04 Glu tRNA |
| 482859 | 482931 | + | 73 | 116628683 | LGAS_t0455 | - | 13 Val tRNA |
| 600613 | 600685 | + | 73 | 116628683 | LGAS_t0571 | - | 11 Arg tRNA |
| 613549 | 613621 | + | 73 | 116628683 | LGAS_t0598 | - | 05 Gln tRNA |
| 614213 | 614294 | + | 82 | 116628683 | LGAS_t0600 | - | Xaa tRNA |
| 653635 | 653707 | + | 73 | 116628683 | LGAS_t0660 | - | 05 Gln tRNA |
| 654299 | 654380 | + | 82 | 116628683 | LGAS_t0662 | - | Xaa tRNA |
| 701626 | 701699 | + | 74 | 116628683 | LGAS_t0718 | - | 11 Arg tRNA |
| 823695 | 823782 | + | 88 | 116628683 | LGAS_t0836 | - | 08 Ser tRNA |
| 1023919 | 1024248 | - | 330 | 116628683 | LGAS_r1021 | - | RNA_RNaseP_classB |
| 1250456 | 1250528 | - | 73 | 116628683 | LGAS_t1252 | - | 05 Gln tRNA |
| 1250535 | 1250606 | - | 72 | 116628683 | LGAS_t1253 | - | 04 Glu tRNA |
| 1264702 | 1265067 | - | 366 | 116628683 | LGAS_s1268 | - | tmRNA |
| 1301986 | 1302057 | + | 72 | 116628683 | LGAS_t1310 | - | Xaa tRNA |
| 1442710 | 1442793 | - | 84 | 116628683 | LGAS_t1454 | - | 15 Leu tRNA |
| 1512369 | 1512457 | - | 89 | 116628683 | LGAS_t1519 | - | 15 Leu tRNA |
| 1531077 | 1531148 | - | 72 | 116628683 | LGAS_t1538 | - | 05 Gln tRNA |
| 1531203 | 1531284 | - | 82 | 116628683 | LGAS_t1539 | - | 18 Tyr tRNA |
| 1535181 | 1535252 | - | 72 | 116628683 | LGAS_t1545 | - | 05 Gln tRNA |
| 1540520 | 1540592 | - | 73 | 116628683 | LGAS_t1552 | - | 12 Thr tRNA |
| 1555766 | 1555838 | - | 73 | 116628683 | LGAS_t1563 | - | 07 Asn tRNA |
| 1555851 | 1555969 | - | 119 | 116628683 | LGAS_r1564 | - | 5S ribosomal RNA |
| 1555970 | 1558600 | - | 2631 | 116628683 | LGAS_r1565 | - | 23S ribosomal RNA |
| 1559153 | 1560731 | - | 1579 | 116628683 | LGAS_r1566 | - | 16S ribosomal RNA |
| 1561127 | 1561216 | - | 90 | 116628683 | LGAS_t1567 | - | 08 Ser tRNA |
| 1561219 | 1561292 | - | 74 | 116628683 | LGAS_t1568 | - | 14 Ile tRNA |
| 1561302 | 1561375 | - | 74 | 116628683 | LGAS_t1569 | - | 01 Gly tRNA |
| 1561393 | 1561465 | - | 73 | 116628683 | LGAS_t1570 | - | 17 Phe tRNA |
| 1561470 | 1561542 | - | 73 | 116628683 | LGAS_t1571 | - | 06 Asp tRNA |
| 1561546 | 1561619 | - | 74 | 116628683 | LGAS_t1572 | - | 16 Met tRNA |
| 1561651 | 1561724 | - | 74 | 116628683 | LGAS_t1573 | - | 16 Met tRNA |
| 1561738 | 1561811 | - | 74 | 116628683 | LGAS_t1574 | - | 16 Met tRNA |
| 1561840 | 1561913 | - | 74 | 116628683 | LGAS_t1575 | - | 03 Pro tRNA |
| 1561919 | 1561992 | - | 74 | 116628683 | LGAS_t1576 | - | 11 Arg tRNA |
| 1562002 | 1562087 | - | 86 | 116628683 | LGAS_t1577 | - | 15 Leu tRNA |
| 1562100 | 1562171 | - | 72 | 116628683 | LGAS_t1578 | - | 01 Gly tRNA |
| 1562191 | 1562263 | - | 73 | 116628683 | LGAS_t1579 | - | 12 Thr tRNA |
| 1562265 | 1562349 | - | 85 | 116628683 | LGAS_t1580 | - | 15 Leu tRNA |
| 1562369 | 1562441 | - | 73 | 116628683 | LGAS_t1581 | - | 10 Lys tRNA |
| 1562444 | 1562516 | - | 73 | 116628683 | LGAS_t1582 | - | 13 Val tRNA |
| 1562521 | 1562639 | - | 119 | 116628683 | LGAS_r1583 | - | 5S ribosomal RNA |
| 1562640 | 1565270 | - | 2631 | 116628683 | LGAS_r1584 | - | 23S ribosomal RNA |
| 1565823 | 1567401 | - | 1579 | 116628683 | LGAS_r1585 | - | 16S ribosomal RNA |
| 1573405 | 1573488 | - | 84 | 116628683 | LGAS_t1590 | - | 15 Leu tRNA |
| 1573520 | 1573590 | - | 71 | 116628683 | LGAS_t1591 | - | 19 Cys tRNA |
| 1573611 | 1573682 | - | 72 | 116628683 | LGAS_t1592 | - | 05 Gln tRNA |
| 1573687 | 1573762 | - | 76 | 116628683 | LGAS_t1593 | - | 09 His tRNA |
| 1573777 | 1573847 | - | 71 | 116628683 | LGAS_t1594 | - | 20 Trp tRNA |
| 1573855 | 1573936 | - | 82 | 116628683 | LGAS_t1595 | - | 18 Tyr tRNA |
| 1573941 | 1574013 | - | 73 | 116628683 | LGAS_t1596 | - | 17 Phe tRNA |
| 1574018 | 1574090 | - | 73 | 116628683 | LGAS_t1597 | - | 06 Asp tRNA |
| 1574094 | 1574167 | - | 74 | 116628683 | LGAS_t1598 | - | 16 Met tRNA |
| 1574175 | 1574265 | - | 91 | 116628683 | LGAS_t1599 | - | 08 Ser tRNA |
| 1574291 | 1574362 | - | 72 | 116628683 | LGAS_t1600 | - | 04 Glu tRNA |
| 1575301 | 1575390 | - | 90 | 116628683 | LGAS_t1602 | - | 08 Ser tRNA |
| 1575393 | 1575466 | - | 74 | 116628683 | LGAS_t1603 | - | 14 Ile tRNA |
| 1575476 | 1575549 | - | 74 | 116628683 | LGAS_t1604 | - | 01 Gly tRNA |
| 1575567 | 1575639 | - | 73 | 116628683 | LGAS_t1605 | - | 17 Phe tRNA |
| 1575644 | 1575716 | - | 73 | 116628683 | LGAS_t1606 | - | 06 Asp tRNA |
| 1575720 | 1575793 | - | 74 | 116628683 | LGAS_t1607 | - | 16 Met tRNA |
| 1575825 | 1575898 | - | 74 | 116628683 | LGAS_t1608 | - | 16 Met tRNA |
| 1575912 | 1575985 | - | 74 | 116628683 | LGAS_t1609 | - | 16 Met tRNA |
| 1576014 | 1576087 | - | 74 | 116628683 | LGAS_t1610 | - | 03 Pro tRNA |
| 1576093 | 1576166 | - | 74 | 116628683 | LGAS_t1611 | - | 11 Arg tRNA |
| 1576176 | 1576261 | - | 86 | 116628683 | LGAS_t1612 | - | 15 Leu tRNA |
| 1576274 | 1576345 | - | 72 | 116628683 | LGAS_t1613 | - | 01 Gly tRNA |
| 1576365 | 1576437 | - | 73 | 116628683 | LGAS_t1614 | - | 12 Thr tRNA |
| 1576439 | 1576523 | - | 85 | 116628683 | LGAS_t1615 | - | 15 Leu tRNA |
| 1576543 | 1576615 | - | 73 | 116628683 | LGAS_t1616 | - | 10 Lys tRNA |
| 1576618 | 1576690 | - | 73 | 116628683 | LGAS_t1617 | - | 13 Val tRNA |
| 1576695 | 1576813 | - | 119 | 116628683 | LGAS_r1618 | - | 5S ribosomal RNA |
| 1576814 | 1579444 | - | 2631 | 116628683 | LGAS_r1619 | - | 23S ribosomal RNA |
| 1579997 | 1581575 | - | 1579 | 116628683 | LGAS_r1620 | - | 16S ribosomal RNA |
| 1783066 | 1783138 | - | 73 | 116628683 | LGAS_t1796 | - | 07 Asn tRNA |
| 1783151 | 1783269 | - | 119 | 116628683 | LGAS_r1797 | - | 5S ribosomal RNA |
| 1783270 | 1785900 | - | 2631 | 116628683 | LGAS_r1798 | - | 23S ribosomal RNA |
| 1786359 | 1786431 | - | 73 | 116628683 | LGAS_t1799 | - | 02 Ala tRNA |
| 1786465 | 1786538 | - | 74 | 116628683 | LGAS_t1800 | - | 14 Ile tRNA |
| 1786679 | 1788257 | - | 1579 | 116628683 | LGAS_r1801 | - | 16S ribosomal RNA |
| 1788578 | 1788653 | - | 76 | 116628683 | LGAS_t1802 | - | 07 Asn tRNA |
| 1788666 | 1788784 | - | 119 | 116628683 | LGAS_r1803 | - | 5S ribosomal RNA |
| 1788785 | 1791415 | - | 2631 | 116628683 | LGAS_r1804 | - | 23S ribosomal RNA |
| 1791874 | 1791946 | - | 73 | 116628683 | LGAS_t1805 | - | 02 Ala tRNA |
| 1791980 | 1792053 | - | 74 | 116628683 | LGAS_t1806 | - | 14 Ile tRNA |
| 1792194 | 1793772 | - | 1579 | 116628683 | LGAS_r1807 | - | 16S ribosomal RNA |

