Геном прокариот/Материалы:NC 008536
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_008536 9965640 bp DNA circular BCT 24-OCT-2006
DEFINITION Solibacter usitatus Ellin6076, complete genome.
ACCESSION NC_008536
VERSION NC_008536.1 GI:116619145
KEYWORDS .
SOURCE Solibacter usitatus Ellin6076
ORGANISM Solibacter usitatus Ellin6076
Bacteria; Acidobacteria; Solibacteres; Solibacterales;
Solibacteraceae; Solibacter.
REFERENCE 1 (bases 1 to 9965640)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Solibacter usitatus Ellin6076
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 9965640)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 9965640)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000473.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634513
Source DNA and bacteria available from Cheryl R. Kuske
(kuske@lanl.gov)
Contacts: Cheryl R. Kuske (kuske@lanl.gov)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 19687 | 19763 | - | 77 | 116619145 | Acid_R0001 | - | 11 Arg tRNA |
| 182141 | 182218 | + | 78 | 116619145 | Acid_R0002 | - | 03 Pro tRNA |
| 327532 | 327608 | - | 77 | 116619145 | Acid_R0003 | - | 16 Met tRNA |
| 348949 | 349025 | - | 77 | 116619145 | Acid_R0004 | - | 16 Met tRNA |
| 630260 | 630334 | - | 75 | 116619145 | Acid_R0005 | - | 01 Gly tRNA |
| 709547 | 709622 | - | 76 | 116619145 | Acid_R0006 | - | 16 Met tRNA |
| 746084 | 746160 | + | 77 | 116619145 | Acid_R0007 | - | 13 Val tRNA |
| 882526 | 882600 | - | 75 | 116619145 | Acid_R0008 | - | 07 Asn tRNA |
| 1209504 | 1209577 | + | 74 | 116619145 | Acid_R0009 | - | 05 Gln tRNA |
| 1248105 | 1249598 | + | 1494 | 116619145 | Acid_R0010 | - | 16S ribosomal RNA |
| 1249865 | 1249940 | + | 76 | 116619145 | Acid_R0011 | - | 02 Ala tRNA |
| 1249955 | 1250031 | + | 77 | 116619145 | Acid_R0012 | - | 14 Ile tRNA |
| 1250233 | 1253163 | + | 2931 | 116619145 | Acid_R0013 | - | 23S ribosomal RNA |
| 1253304 | 1253420 | + | 117 | 116619145 | Acid_R0014 | - | 5S ribosomal RNA |
| 1431141 | 1431217 | - | 77 | 116619145 | Acid_R0015 | - | 16 Met tRNA |
| 1688343 | 1688431 | - | 89 | 116619145 | Acid_R0016 | - | 15 Leu tRNA |
| 1691811 | 1691886 | + | 76 | 116619145 | Acid_R0017 | - | 10 Lys tRNA |
| 1811009 | 1811085 | + | 77 | 116619145 | Acid_R0018 | - | 11 Arg tRNA |
| 1969439 | 1970932 | + | 1494 | 116619145 | Acid_R0019 | - | 16S ribosomal RNA |
| 1971197 | 1971272 | + | 76 | 116619145 | Acid_R0020 | - | 02 Ala tRNA |
| 1971305 | 1971381 | + | 77 | 116619145 | Acid_R0021 | - | 14 Ile tRNA |
| 1971626 | 1974556 | + | 2931 | 116619145 | Acid_R0022 | - | 23S ribosomal RNA |
| 1974694 | 1974810 | + | 117 | 116619145 | Acid_R0023 | - | 5S ribosomal RNA |
| 1983234 | 1983310 | + | 77 | 116619145 | Acid_R0024 | - | 03 Pro tRNA |
| 2068389 | 2068480 | + | 92 | 116619145 | Acid_R0025 | - | 08 Ser tRNA |
| 2200500 | 2200574 | + | 75 | 116619145 | Acid_R0026 | - | 19 Cys tRNA |
| 2389808 | 2389884 | + | 77 | 116619145 | Acid_R0027 | - | 11 Arg tRNA |
| 2703580 | 2703654 | - | 75 | 116619145 | Acid_R0028 | - | 04 Glu tRNA |
| 2995019 | 2995095 | - | 77 | 116619145 | Acid_R0029 | - | 13 Val tRNA |
| 3409567 | 3409656 | - | 90 | 116619145 | Acid_R0030 | - | 08 Ser tRNA |
| 3488758 | 3488833 | + | 76 | 116619145 | Acid_R0031 | - | 10 Lys tRNA |
| 3585610 | 3585685 | + | 76 | 116619145 | Acid_R0032 | - | 02 Ala tRNA |
| 3673987 | 3674061 | + | 75 | 116619145 | Acid_R0033 | - | 01 Gly tRNA |
| 4008774 | 4008874 | - | 101 | 116619145 | Acid_R0034 | - | SRP RNA; RNA component of signal recognition particle |
| 4117336 | 4117425 | + | 90 | 116619145 | Acid_R0035 | - | Sec tRNA |
| 4360710 | 4360781 | + | 72 | 116619145 | Acid_R0036 | - | 16 Met tRNA |
| 4664464 | 4664540 | - | 77 | 116619145 | Acid_R0037 | - | 03 Pro tRNA |
| 4706493 | 4706566 | - | 74 | 116619145 | Acid_R0038 | - | 05 Gln tRNA |
| 4999957 | 5000033 | - | 77 | 116619145 | Acid_R0039 | - | 09 His tRNA |
| 5195913 | 5196108 | + | 196 | 116619145 | Acid_R0040 | - | RNA component of RNaseP |
| 5294404 | 5294752 | - | 349 | 116619145 | Acid_R0041 | - | tmRNA |
| 5838272 | 5838397 | + | 126 | 116619145 | Acid_R0042 | - | |
| 5945044 | 5945120 | - | 77 | 116619145 | Acid_R0043 | - | 13 Val tRNA |
| 6120101 | 6120177 | + | 77 | 116619145 | Acid_R0044 | - | 06 Asp tRNA |
| 6256025 | 6256111 | + | 87 | 116619145 | Acid_R0045 | - | 15 Leu tRNA |
| 6277952 | 6278028 | + | 77 | 116619145 | Acid_R0046 | - | 11 Arg tRNA |
| 6734555 | 6734632 | + | 78 | 116619145 | Acid_R0047 | - | 04 Glu tRNA |
| 6791461 | 6791536 | - | 76 | 116619145 | Acid_R0048 | - | 17 Phe tRNA |
| 6814760 | 6814849 | - | 90 | 116619145 | Acid_R0049 | - | 08 Ser tRNA |
| 7518659 | 7518734 | + | 76 | 116619145 | Acid_R0050 | - | 12 Thr tRNA |
| 7598057 | 7598134 | + | 78 | 116619145 | Acid_R0051 | - | Xaa tRNA |
| 7940543 | 7940630 | + | 88 | 116619145 | Acid_R0052 | - | 18 Tyr tRNA |
| 7940701 | 7940776 | + | 76 | 116619145 | Acid_R0053 | - | 12 Thr tRNA |
| 7942298 | 7942372 | + | 75 | 116619145 | Acid_R0054 | - | 20 Trp tRNA |
| 7943870 | 7943956 | + | 87 | 116619145 | Acid_R0055 | - | 15 Leu tRNA |
| 8326562 | 8326637 | - | 76 | 116619145 | Acid_R0056 | - | 12 Thr tRNA |
| 8478218 | 8478304 | + | 87 | 116619145 | Acid_R0057 | - | 15 Leu tRNA |
| 9616774 | 9616850 | - | 77 | 116619145 | Acid_R0058 | - | 11 Arg tRNA |
| 9855350 | 9855438 | - | 89 | 116619145 | Acid_R0059 | - | 15 Leu tRNA |
| 9855481 | 9855570 | - | 90 | 116619145 | Acid_R0060 | - | 08 Ser tRNA |
| 9930164 | 9930239 | - | 76 | 116619145 | Acid_R0061 | - | 02 Ala tRNA |
| 9965388 | 9965463 | - | 76 | 116619145 | Acid_R0062 | - | 01 Gly tRNA |

