Геном прокариот/Материалы:NC 008541
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LOCUS NC_008541 4698945 bp DNA circular BCT 25-OCT-2006
DEFINITION Arthrobacter sp. FB24 chromosome 1, complete sequence.
ACCESSION NC_008541
VERSION NC_008541.1 GI:116668568
KEYWORDS .
SOURCE Arthrobacter sp. FB24
ORGANISM Arthrobacter sp. FB24
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
Micrococcineae; Micrococcaceae; Arthrobacter.
REFERENCE 1 (bases 1 to 4698945)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R.,
Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome 1 of Arthrobacter sp. FB24
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4698945)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4698945)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R.,
Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (28-AUG-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000454.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634492
Source DNA and bacteria available from Cindy H. Nakatsu
(cnakatsu@purdue.edu)
Contacts: Cindy H. Nakatsu (cnakatsu@purdue.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
Additional notes: There is an uncertain number of G/C in
homopolimer repeats in the regions 3501583-3501612,
3732178-3732195.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 11842 | 11915 | + | 74 | 116668568 | Arth_R0001 | - | 14 Ile tRNA |
| 12163 | 12238 | + | 76 | 116668568 | Arth_R0002 | - | 02 Ala tRNA |
| 33132 | 33214 | + | 83 | 116668568 | Arth_R0003 | - | 15 Leu tRNA |
| 76568 | 76640 | + | 73 | 116668568 | Arth_R0004 | - | 10 Lys tRNA |
| 218923 | 218995 | + | 73 | 116668568 | Arth_R0005 | - | 10 Lys tRNA |
| 421350 | 421422 | + | 73 | 116668568 | Arth_R0006 | - | 04 Glu tRNA |
| 421519 | 421592 | + | 74 | 116668568 | Arth_R0007 | - | 06 Asp tRNA |
| 421641 | 421716 | + | 76 | 116668568 | Arth_R0008 | - | 17 Phe tRNA |
| 595991 | 596080 | - | 90 | 116668568 | Arth_R0009 | - | SRP RNA; RNA component of signal recognition particle |
| 596911 | 596995 | + | 85 | 116668568 | Arth_R0010 | - | 08 Ser tRNA |
| 687247 | 687336 | - | 90 | 116668568 | Arth_R0011 | - | 08 Ser tRNA |
| 710671 | 710744 | - | 74 | 116668568 | Arth_R0012 | - | 11 Arg tRNA |
| 722327 | 722414 | - | 88 | 116668568 | Arth_R0013 | - | 08 Ser tRNA |
| 733106 | 733196 | - | 91 | 116668568 | Arth_R0014 | - | 08 Ser tRNA |
| 760748 | 760820 | - | 73 | 116668568 | Arth_R0015 | - | 12 Thr tRNA |
| 792344 | 793860 | + | 1517 | 116668568 | Arth_R0016 | - | 16S ribosomal RNA |
| 794378 | 797515 | + | 3138 | 116668568 | Arth_R0017 | - | 23S ribosomal RNA |
| 797736 | 797852 | + | 117 | 116668568 | Arth_R0018 | - | 5S ribosomal RNA |
| 816148 | 816224 | + | 77 | 116668568 | Arth_R0019 | - | 12 Thr tRNA |
| 877148 | 877220 | - | 73 | 116668568 | Arth_R0020 | - | 11 Arg tRNA |
| 1145794 | 1147310 | + | 1517 | 116668568 | Arth_R0021 | - | 16S ribosomal RNA |
| 1147827 | 1150964 | + | 3138 | 116668568 | Arth_R0022 | - | 23S ribosomal RNA |
| 1151187 | 1151303 | + | 117 | 116668568 | Arth_R0023 | - | 5S ribosomal RNA |
| 1251644 | 1251717 | + | 74 | 116668568 | Arth_R0024 | - | 15 Leu tRNA |
| 1326164 | 1326235 | + | 72 | 116668568 | Arth_R0025 | - | 05 Gln tRNA |
| 1502820 | 1502892 | + | 73 | 116668568 | Arth_R0026 | - | 07 Asn tRNA |
| 1503019 | 1503091 | + | 73 | 116668568 | Arth_R0027 | - | 07 Asn tRNA |
| 1509118 | 1509191 | + | 74 | 116668568 | Arth_R0028 | - | 16 Met tRNA |
| 1678840 | 1680356 | + | 1517 | 116668568 | Arth_R0029 | - | 16S ribosomal RNA |
| 1680874 | 1684011 | + | 3138 | 116668568 | Arth_R0030 | - | 23S ribosomal RNA |
| 1684234 | 1684350 | + | 117 | 116668568 | Arth_R0031 | - | 5S ribosomal RNA |
| 1714644 | 1714720 | + | 77 | 116668568 | Arth_R0032 | - | 03 Pro tRNA |
| 1862990 | 1863064 | - | 75 | 116668568 | Arth_R0033 | - | 13 Val tRNA |
| 1863103 | 1863175 | - | 73 | 116668568 | Arth_R0034 | - | 01 Gly tRNA |
| 1863231 | 1863305 | - | 75 | 116668568 | Arth_R0035 | - | 13 Val tRNA |
| 1863348 | 1863418 | - | 71 | 116668568 | Arth_R0036 | - | 19 Cys tRNA |
| 1863465 | 1863537 | - | 73 | 116668568 | Arth_R0037 | - | 01 Gly tRNA |
| 1863854 | 1863928 | + | 75 | 116668568 | Arth_R0038 | - | 13 Val tRNA |
| 1892239 | 1892320 | + | 82 | 116668568 | Arth_R0039 | - | 15 Leu tRNA |
| 2436509 | 2436594 | - | 86 | 116668568 | Arth_R0040 | - | 15 Leu tRNA |
| 2670834 | 2670906 | - | 73 | 116668568 | Arth_R0041 | - | 02 Ala tRNA |
| 2671099 | 2671174 | - | 76 | 116668568 | Arth_R0042 | - | 02 Ala tRNA |
| 2701743 | 2701817 | - | 75 | 116668568 | Arth_R0043 | - | 03 Pro tRNA |
| 2701975 | 2702048 | + | 74 | 116668568 | Arth_R0044 | - | 01 Gly tRNA |
| 2715875 | 2715947 | + | 73 | 116668568 | Arth_R0045 | - | 11 Arg tRNA |
| 2731989 | 2732061 | + | 73 | 116668568 | Arth_R0046 | - | 09 His tRNA |
| 2735957 | 2736294 | - | 338 | 116668568 | Arth_R0068 | - | RNA component of RNaseP |
| 2756573 | 2756648 | - | 76 | 116668568 | Arth_R0047 | - | 13 Val tRNA |
| 2827052 | 2827127 | - | 76 | 116668568 | Arth_R0048 | - | 04 Glu tRNA |
| 2827255 | 2827326 | - | 72 | 116668568 | Arth_R0049 | - | 05 Gln tRNA |
| 2854533 | 2854608 | + | 76 | 116668568 | Arth_R0050 | - | 10 Lys tRNA |
| 2856320 | 2856401 | + | 82 | 116668568 | Arth_R0051 | - | 15 Leu tRNA |
| 2947636 | 2947708 | + | 73 | 116668568 | Arth_R0052 | - | 11 Arg tRNA |
| 2985134 | 2985502 | - | 369 | 116668568 | Arth_R0069 | - | tmRNA |
| 3091249 | 3091325 | - | 77 | 116668568 | Arth_R0053 | - | 16 Met tRNA |
| 3091514 | 3091587 | - | 74 | 116668568 | Arth_R0054 | - | 16 Met tRNA |
| 3217415 | 3217490 | - | 76 | 116668568 | Arth_R0055 | - | 02 Ala tRNA |
| 3364585 | 3364657 | - | 73 | 116668568 | Arth_R0056 | - | 20 Trp tRNA |
| 3416184 | 3416260 | - | 77 | 116668568 | Arth_R0057 | - | 16 Met tRNA |
| 3416322 | 3416393 | - | 72 | 116668568 | Arth_R0058 | - | 12 Thr tRNA |
| 3444091 | 3444175 | - | 85 | 116668568 | Arth_R0059 | - | 18 Tyr tRNA |
| 3828097 | 3828173 | + | 77 | 116668568 | Arth_R0060 | - | 03 Pro tRNA |
| 4364506 | 4364579 | + | 74 | 116668568 | Arth_R0061 | - | 01 Gly tRNA |
| 4414904 | 4415020 | - | 117 | 116668568 | Arth_R0062 | - | 5S ribosomal RNA |
| 4415241 | 4418378 | - | 3138 | 116668568 | Arth_R0063 | - | 23S ribosomal RNA |
| 4418896 | 4420412 | - | 1517 | 116668568 | Arth_R0064 | - | 16S ribosomal RNA |
| 4425408 | 4425524 | - | 117 | 116668568 | Arth_R0065 | - | 5S ribosomal RNA |
| 4425746 | 4428883 | - | 3138 | 116668568 | Arth_R0066 | - | 23S ribosomal RNA |
| 4429401 | 4430917 | - | 1517 | 116668568 | Arth_R0067 | - | 16S ribosomal RNA |

