Геном прокариот/Материалы:NC 008610
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_008610 1160782 bp DNA circular BCT 26-FEB-2007
DEFINITION Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),
complete genome.
ACCESSION NC_008610
VERSION NC_008610.1 GI:118602060
KEYWORDS .
SOURCE Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
ORGANISM Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing
symbionts.
REFERENCE 1 (bases 1 to 1160782)
AUTHORS Newton,I.L., Woyke,T., Auchtung,T.A., Dilly,G.F., Dutton,R.J.,
Fisher,M.C., Fontanez,K.M., Lau,E., Stewart,F.J., Richardson,P.M.,
Barry,K.W., Saunders,E., Detter,J.C., Wu,D., Eisen,J.A. and
Cavanaugh,C.M.
CONSRTM US DOE Joint Genome Institute
TITLE The Calyptogena magnifica chemoautotrophic symbiont genome
JOURNAL Science 315 (5814), 998-1000 (2007)
PUBMED 17303757
REFERENCE 2 (bases 1 to 1160782)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1160782)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000488.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000245
Source DNA and bacteria available from Colleen M. Cavanaugh
(cavanaug@fas.harvard.edu)
Contacts: Colleen M. Cavanaugh (cavanaug@fas.harvard.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 47921 | 47996 | + | 76 | 118602060 | Rmag_R0001 | - | 12 Thr tRNA |
| 53269 | 53344 | + | 76 | 118602060 | Rmag_R0002 | - | 17 Phe tRNA |
| 60338 | 60414 | + | 77 | 118602060 | Rmag_R0003 | - | 16 Met tRNA |
| 71406 | 71482 | + | 77 | 118602060 | Rmag_R0004 | - | 16 Met tRNA |
| 127740 | 127816 | - | 77 | 118602060 | Rmag_R0005 | - | 16 Met tRNA |
| 130754 | 130828 | - | 75 | 118602060 | Rmag_R0006 | - | 05 Gln tRNA |
| 177719 | 177792 | - | 74 | 118602060 | Rmag_R0007 | - | 19 Cys tRNA |
| 177865 | 177940 | - | 76 | 118602060 | Rmag_R0008 | - | 01 Gly tRNA |
| 178612 | 178688 | - | 77 | 118602060 | Rmag_R0009 | - | 11 Arg tRNA |
| 295585 | 295671 | + | 87 | 118602060 | Rmag_R0010 | - | 15 Leu tRNA |
| 355140 | 355215 | + | 76 | 118602060 | Rmag_R0011 | - | 02 Ala tRNA |
| 355237 | 355311 | + | 75 | 118602060 | Rmag_R0012 | - | 04 Glu tRNA |
| 355375 | 355449 | + | 75 | 118602060 | Rmag_R0013 | - | 04 Glu tRNA |
| 440344 | 440419 | - | 76 | 118602060 | Rmag_R0014 | - | 09 His tRNA |
| 442219 | 442295 | - | 77 | 118602060 | Rmag_R0015 | - | 11 Arg tRNA |
| 442344 | 442420 | - | 77 | 118602060 | Rmag_R0016 | - | 03 Pro tRNA |
| 463030 | 463105 | + | 76 | 118602060 | Rmag_R0017 | - | 07 Asn tRNA |
| 470448 | 470524 | - | 77 | 118602060 | Rmag_R0018 | - | 11 Arg tRNA |
| 471419 | 471495 | + | 77 | 118602060 | Rmag_R0019 | - | 13 Val tRNA |
| 514527 | 514641 | - | 115 | 118602060 | Rmag_R0020 | - | SRP RNA; RNA component of signal recognition particle |
| 621148 | 621235 | - | 88 | 118602060 | Rmag_R0021 | - | 08 Ser tRNA |
| 645473 | 645548 | - | 76 | 118602060 | Rmag_R0022 | - | 10 Lys tRNA |
| 672337 | 672413 | - | 77 | 118602060 | Rmag_R0023 | - | 11 Arg tRNA |
| 688967 | 689043 | - | 77 | 118602060 | Rmag_R0024 | - | 03 Pro tRNA |
| 708434 | 708510 | - | 77 | 118602060 | Rmag_R0025 | - | 06 Asp tRNA |
| 708521 | 708596 | - | 76 | 118602060 | Rmag_R0026 | - | 13 Val tRNA |
| 840670 | 840959 | - | 290 | 118602060 | Rmag_R0027 | - | RNA component of RNaseP |
| 873976 | 874051 | - | 76 | 118602060 | Rmag_R0028 | - | 20 Trp tRNA |
| 875358 | 875433 | - | 76 | 118602060 | Rmag_R0029 | - | 12 Thr tRNA |
| 875449 | 875522 | - | 74 | 118602060 | Rmag_R0030 | - | 01 Gly tRNA |
| 875540 | 875624 | - | 85 | 118602060 | Rmag_R0031 | - | 18 Tyr tRNA |
| 893674 | 893765 | + | 92 | 118602060 | Rmag_R0032 | - | 08 Ser tRNA |
| 909057 | 909141 | - | 85 | 118602060 | Rmag_R0033 | - | 15 Leu tRNA |
| 989716 | 989802 | + | 87 | 118602060 | Rmag_R0034 | - | 15 Leu tRNA |
| 1058349 | 1058438 | + | 90 | 118602060 | Rmag_R0035 | - | 08 Ser tRNA |
| 1077264 | 1077379 | - | 116 | 118602060 | Rmag_R0036 | - | 5S ribosomal RNA |
| 1077544 | 1080173 | - | 2630 | 118602060 | Rmag_R0037 | - | 23S ribosomal RNA |
| 1080775 | 1080850 | - | 76 | 118602060 | Rmag_R0038 | - | 02 Ala tRNA |
| 1080975 | 1081051 | - | 77 | 118602060 | Rmag_R0039 | - | 14 Ile tRNA |
| 1081270 | 1082807 | - | 1538 | 118602060 | Rmag_R0040 | - | 16S ribosomal RNA |
| 1159047 | 1159132 | - | 86 | 118602060 | Rmag_R0041 | - | 15 Leu tRNA |

