Геном прокариот/Материалы:NC 008639
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LOCUS NC_008639 3133902 bp DNA circular BCT 12-DEC-2006
DEFINITION Chlorobium phaeobacteroides DSM 266, complete genome.
ACCESSION NC_008639
VERSION NC_008639.1 GI:119355857
KEYWORDS .
SOURCE Chlorobium phaeobacteroides DSM 266
ORGANISM Chlorobium phaeobacteroides DSM 266
Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae;
Chlorobium/Pelodictyon group; Chlorobium.
REFERENCE 1 (bases 1 to 3133902)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T.,
Overmann,J., Bryant,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chlorobium phaeobacteroides DSM 266
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3133902)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3133902)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T.,
Overmann,J., Bryant,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000492.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634474
Source DNA and bacteria available from Donald A. Bryant
(dab14@psu.edu)
Bacteria available from DSMZ: DSM 266
Contacts: Donald A. Bryant (dab14@psu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 51893 | 51965 | - | 73 | 119355857 | Cpha266_R0001 | - | 12 Thr tRNA |
| 193926 | 194001 | - | 76 | 119355857 | Cpha266_R0002 | - | 11 Arg tRNA |
| 252936 | 253008 | + | 73 | 119355857 | Cpha266_R0003 | - | 12 Thr tRNA |
| 253022 | 253104 | + | 83 | 119355857 | Cpha266_R0004 | - | 18 Tyr tRNA |
| 253131 | 253203 | + | 73 | 119355857 | Cpha266_R0005 | - | 12 Thr tRNA |
| 253227 | 253302 | + | 76 | 119355857 | Cpha266_R0006 | - | 20 Trp tRNA |
| 337928 | 338001 | + | 74 | 119355857 | Cpha266_R0007 | - | 03 Pro tRNA |
| 366885 | 366973 | - | 89 | 119355857 | Cpha266_R0008 | - | 15 Leu tRNA |
| 436026 | 436098 | + | 73 | 119355857 | Cpha266_R0009 | - | 10 Lys tRNA |
| 436115 | 436196 | + | 82 | 119355857 | Cpha266_R0010 | - | 15 Leu tRNA |
| 473467 | 473542 | + | 76 | 119355857 | Cpha266_R0011 | - | 17 Phe tRNA |
| 713392 | 713468 | + | 77 | 119355857 | Cpha266_R0012 | - | 13 Val tRNA |
| 918432 | 918507 | - | 76 | 119355857 | Cpha266_R0013 | - | 05 Gln tRNA |
| 919497 | 919570 | - | 74 | 119355857 | Cpha266_R0014 | - | 11 Arg tRNA |
| 919575 | 919651 | - | 77 | 119355857 | Cpha266_R0015 | - | 04 Glu tRNA |
| 919687 | 919760 | - | 74 | 119355857 | Cpha266_R0016 | - | 16 Met tRNA |
| 1009928 | 1010327 | + | 400 | 119355857 | Cpha266_R0017 | - | tmRNA |
| 1048324 | 1048398 | + | 75 | 119355857 | Cpha266_R0018 | - | 05 Gln tRNA |
| 1053155 | 1053227 | + | 73 | 119355857 | Cpha266_R0019 | - | 03 Pro tRNA |
| 1053256 | 1053331 | + | 76 | 119355857 | Cpha266_R0020 | - | 11 Arg tRNA |
| 1053357 | 1053430 | + | 74 | 119355857 | Cpha266_R0021 | - | 09 His tRNA |
| 1053442 | 1053513 | + | 72 | 119355857 | Cpha266_R0022 | - | 04 Glu tRNA |
| 1059928 | 1060003 | + | 76 | 119355857 | Cpha266_R0023 | - | 10 Lys tRNA |
| 1099660 | 1099746 | - | 87 | 119355857 | Cpha266_R0024 | - | 15 Leu tRNA |
| 1099807 | 1099888 | - | 82 | 119355857 | Cpha266_R0025 | - | 15 Leu tRNA |
| 1150601 | 1150676 | - | 76 | 119355857 | Cpha266_R0026 | - | 16 Met tRNA |
| 1327970 | 1328042 | + | 73 | 119355857 | Cpha266_R0027 | - | 11 Arg tRNA |
| 1328059 | 1328131 | + | 73 | 119355857 | Cpha266_R0028 | - | 03 Pro tRNA |
| 1663969 | 1664045 | + | 77 | 119355857 | Cpha266_R0029 | - | 13 Val tRNA |
| 1719488 | 1719561 | + | 74 | 119355857 | Cpha266_R0030 | - | 19 Cys tRNA |
| 1850219 | 1850311 | - | 93 | 119355857 | Cpha266_R0031 | - | 08 Ser tRNA |
| 1850324 | 1850409 | - | 86 | 119355857 | Cpha266_R0032 | - | 08 Ser tRNA |
| 1850607 | 1850697 | - | 91 | 119355857 | Cpha266_R0033 | - | 08 Ser tRNA |
| 1872397 | 1872470 | + | 74 | 119355857 | Cpha266_R0034 | - | 16 Met tRNA |
| 1872482 | 1872557 | + | 76 | 119355857 | Cpha266_R0035 | - | 01 Gly tRNA |
| 1953685 | 1953769 | + | 85 | 119355857 | Cpha266_R0036 | - | 15 Leu tRNA |
| 1954821 | 1955167 | + | 347 | 119355857 | Cpha266_R0037 | - | RNaseP RNA |
| 2254342 | 2254414 | + | 73 | 119355857 | Cpha266_R0038 | - | 01 Gly tRNA |
| 2254640 | 2254729 | + | 90 | 119355857 | Cpha266_R0039 | - | 08 Ser tRNA |
| 2296966 | 2297038 | + | 73 | 119355857 | Cpha266_R0040 | - | 02 Ala tRNA |
| 2417293 | 2417367 | + | 75 | 119355857 | Cpha266_R0041 | - | 06 Asp tRNA |
| 2793075 | 2793147 | - | 73 | 119355857 | Cpha266_R0042 | - | 01 Gly tRNA |
| 2855225 | 2855296 | - | 72 | 119355857 | Cpha266_R0043 | - | 07 Asn tRNA |
| 2895049 | 2895158 | - | 110 | 119355857 | Cpha266_R0044 | - | 5S ribosomal RNA |
| 2895264 | 2898182 | - | 2919 | 119355857 | Cpha266_R0045 | - | 23S ribosomal RNA |
| 2898388 | 2898463 | - | 76 | 119355857 | Cpha266_R0046 | - | 02 Ala tRNA |
| 2898497 | 2898573 | - | 77 | 119355857 | Cpha266_R0047 | - | 14 Ile tRNA |
| 2898750 | 2900243 | - | 1494 | 119355857 | Cpha266_R0048 | - | 16S ribosomal RNA |
| 3047185 | 3047294 | - | 110 | 119355857 | Cpha266_R0049 | - | 5S ribosomal RNA |
| 3047399 | 3050317 | - | 2919 | 119355857 | Cpha266_R0050 | - | 23S ribosomal RNA |
| 3050523 | 3050598 | - | 76 | 119355857 | Cpha266_R0051 | - | 02 Ala tRNA |
| 3050632 | 3050708 | - | 77 | 119355857 | Cpha266_R0052 | - | 14 Ile tRNA |
| 3050885 | 3052378 | - | 1494 | 119355857 | Cpha266_R0053 | - | 16S ribosomal RNA |
| 3074175 | 3074248 | - | 74 | 119355857 | Cpha266_R0054 | - | 13 Val tRNA |
| 3092183 | 3092288 | - | 106 | 119355857 | Cpha266_R0055 | - | SRP RNA; RNA component of signal recognition particle |
| 3098078 | 3098150 | - | 73 | 119355857 | Cpha266_R0056 | - | 02 Ala tRNA |

