Геном прокариот/Материалы:NC 008686
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LOCUS NC_008686 2852282 bp DNA circular BCT 09-AUG-2007
DEFINITION Paracoccus denitrificans PD1222 chromosome 1, complete sequence.
ACCESSION NC_008686
VERSION NC_008686.1 GI:119382757
KEYWORDS .
SOURCE Paracoccus denitrificans PD1222
ORGANISM Paracoccus denitrificans PD1222
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
Rhodobacteraceae; Paracoccus.
REFERENCE 1 (bases 1 to 2852282)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Lykidis,A., Spiro,S., Richardson,D.J., Moir,J.W.B., Ferguson,S.J.,
van Spanning,R.J.M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome 1 of Paracoccus denitrificans
PD1222
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2852282)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2852282)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Lykidis,A., Spiro,S., Richardson,D.J., Moir,J.W.B., Ferguson,S.J.,
van Spanning,R.J.M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000489.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634481
Source DNA and bacteria available from Stephen Spiro
(stephen.spiro@utdallas.edu)
Contacts: Stephen Spiro (stephen.spiro@utdallas.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
There is an unverified repetitive structure in the vicinity of
complement(2413304-2418104)
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 48588 | 48662 | - | 75 | 119382757 | Pden_R0001 | - | 13 Val tRNA |
| 58447 | 59902 | + | 1456 | 119382757 | Pden_R0002 | - | 16S ribosomal RNA |
| 60071 | 60147 | + | 77 | 119382757 | Pden_R0003 | - | 14 Ile tRNA |
| 60210 | 60285 | + | 76 | 119382757 | Pden_R0004 | - | 02 Ala tRNA |
| 60609 | 63451 | + | 2843 | 119382757 | Pden_R0005 | - | 23S ribosomal RNA |
| 63561 | 63682 | + | 122 | 119382757 | Pden_R0006 | - | 5S ribosomal RNA |
| 63740 | 63816 | + | 77 | 119382757 | Pden_R0007 | - | 16 Met tRNA |
| 361057 | 361146 | + | 90 | 119382757 | Pden_R0008 | - | 08 Ser tRNA |
| 364942 | 365017 | - | 76 | 119382757 | Pden_R0009 | - | 10 Lys tRNA |
| 411262 | 411338 | + | 77 | 119382757 | Pden_R0010 | - | 03 Pro tRNA |
| 466890 | 466974 | + | 85 | 119382757 | Pden_R0011 | - | 15 Leu tRNA |
| 506103 | 506176 | - | 74 | 119382757 | Pden_R0012 | - | 01 Gly tRNA |
| 722941 | 723016 | + | 76 | 119382757 | Pden_R0013 | - | 20 Trp tRNA |
| 848876 | 848952 | + | 77 | 119382757 | Pden_R0014 | - | 03 Pro tRNA |
| 857717 | 857793 | - | 77 | 119382757 | Pden_R0015 | - | 11 Arg tRNA |
| 894322 | 894398 | + | 77 | 119382757 | Pden_R0016 | - | 16 Met tRNA |
| 948593 | 948682 | + | 90 | 119382757 | Pden_R0017 | - | 08 Ser tRNA |
| 1178499 | 1178575 | + | 77 | 119382757 | Pden_R0018 | - | 06 Asp tRNA |
| 1195017 | 1195091 | - | 75 | 119382757 | Pden_R0019 | - | 05 Gln tRNA |
| 1274404 | 1274493 | - | 90 | 119382757 | Pden_R0020 | - | 08 Ser tRNA |
| 1343520 | 1343603 | - | 84 | 119382757 | Pden_R0021 | - | 15 Leu tRNA |
| 1523471 | 1523547 | - | 77 | 119382757 | Pden_R0022 | - | 09 His tRNA |
| 1565680 | 1565769 | + | 90 | 119382757 | Pden_R0023 | - | 08 Ser tRNA |
| 1725856 | 1725931 | + | 76 | 119382757 | Pden_R0024 | - | 02 Ala tRNA |
| 1747394 | 1747494 | + | 101 | 119382757 | Pden_R0025 | - | |
| 1761801 | 1761875 | + | 75 | 119382757 | Pden_R0026 | - | 07 Asn tRNA |
| 1769711 | 1769785 | - | 75 | 119382757 | Pden_R0027 | - | 04 Glu tRNA |
| 1771692 | 1771765 | - | 74 | 119382757 | Pden_R0028 | - | 01 Gly tRNA |
| 1786959 | 1787034 | + | 76 | 119382757 | Pden_R0029 | - | 17 Phe tRNA |
| 1788974 | 1789050 | - | 77 | 119382757 | Pden_R0030 | - | 11 Arg tRNA |
| 1806275 | 1806376 | + | 102 | 119382757 | Pden_R0031 | - | SRP RNA; RNA component of signal recognition particle |
| 1863668 | 1863745 | + | 78 | 119382757 | Pden_R0032 | - | 03 Pro tRNA |
| 1879838 | 1879912 | + | 75 | 119382757 | Pden_R0033 | - | 04 Glu tRNA |
| 1907794 | 1907870 | - | 77 | 119382757 | Pden_R0034 | - | 06 Asp tRNA |
| 1907899 | 1907975 | - | 77 | 119382757 | Pden_R0035 | - | 06 Asp tRNA |
| 1931540 | 1931626 | - | 87 | 119382757 | Pden_R0036 | - | 15 Leu tRNA |
| 1965201 | 1965275 | + | 75 | 119382757 | Pden_R0037 | - | 12 Thr tRNA |
| 1974456 | 1974532 | - | 77 | 119382757 | Pden_R0038 | - | 16 Met tRNA |
| 1974590 | 1974711 | - | 122 | 119382757 | Pden_R0039 | - | 5S ribosomal RNA |
| 1974821 | 1977663 | - | 2843 | 119382757 | Pden_R0040 | - | 23S ribosomal RNA |
| 1977987 | 1978062 | - | 76 | 119382757 | Pden_R0041 | - | 02 Ala tRNA |
| 1978125 | 1978201 | - | 77 | 119382757 | Pden_R0042 | - | 14 Ile tRNA |
| 1978370 | 1979825 | - | 1456 | 119382757 | Pden_R0043 | - | 16S ribosomal RNA |
| 1982093 | 1982169 | - | 77 | 119382757 | Pden_R0044 | - | 11 Arg tRNA |
| 2000687 | 2000762 | - | 76 | 119382757 | Pden_R0045 | - | 12 Thr tRNA |
| 2057161 | 2057246 | + | 86 | 119382757 | Pden_R0046 | - | 15 Leu tRNA |
| 2281331 | 2281406 | - | 76 | 119382757 | Pden_R0047 | - | 16 Met tRNA |
| 2341732 | 2341807 | - | 76 | 119382757 | Pden_R0048 | - | 02 Ala tRNA |
| 2387713 | 2387787 | + | 75 | 119382757 | Pden_R0049 | - | 01 Gly tRNA |
| 2423242 | 2423315 | + | 74 | 119382757 | Pden_R0050 | - | 19 Cys tRNA |
| 2841537 | 2841628 | - | 92 | 119382757 | Pden_R0051 | - | Sec tRNA |

