Геном прокариот/Материалы:NC 008699
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_008699 4985871 bp DNA circular BCT 21-DEC-2006
DEFINITION Nocardioides sp. JS614, complete genome.
ACCESSION NC_008699
VERSION NC_008699.1 GI:119714272
KEYWORDS .
SOURCE Nocardioides sp. JS614
ORGANISM Nocardioides sp. JS614
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
Propionibacterineae; Nocardioidaceae; Nocardioides.
REFERENCE 1 (bases 1 to 4985871)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T.,
Gossett,J. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome1 of Nocardioides sp. JS614
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4985871)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4985871)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T.,
Gossett,J. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000509.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634503
Source DNA and bacteria available from James Gossett
(jmg18@cornell.edu)
Contacts: James Gossett (jmg18@cornell.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 11935 | 12008 | + | 74 | 119714272 | Noca_R0001 | - | 14 Ile tRNA |
| 12276 | 12351 | + | 76 | 119714272 | Noca_R0002 | - | 02 Ala tRNA |
| 32617 | 32700 | + | 84 | 119714272 | Noca_R0003 | - | 15 Leu tRNA |
| 196527 | 196614 | - | 88 | 119714272 | Noca_R0004 | - | 08 Ser tRNA |
| 197696 | 197788 | + | 93 | 119714272 | Noca_R0005 | - | 08 Ser tRNA |
| 202663 | 202735 | + | 73 | 119714272 | Noca_R0006 | - | 11 Arg tRNA |
| 303375 | 303464 | + | 90 | 119714272 | Noca_R0007 | - | 08 Ser tRNA |
| 339643 | 339731 | - | 89 | 119714272 | Noca_R0008 | - | 08 Ser tRNA |
| 339855 | 339945 | + | 91 | 119714272 | Noca_R0009 | - | SRP RNA; RNA component of signal recognition particle |
| 347117 | 347193 | - | 77 | 119714272 | Noca_R0010 | - | 03 Pro tRNA |
| 425150 | 425225 | + | 76 | 119714272 | Noca_R0011 | - | 12 Thr tRNA |
| 595077 | 595158 | + | 82 | 119714272 | Noca_R0012 | - | 18 Tyr tRNA |
| 709261 | 709333 | + | 73 | 119714272 | Noca_R0013 | - | 12 Thr tRNA |
| 709389 | 709462 | + | 74 | 119714272 | Noca_R0014 | - | 16 Met tRNA |
| 733698 | 733773 | + | 76 | 119714272 | Noca_R0015 | - | 20 Trp tRNA |
| 827249 | 827324 | - | 76 | 119714272 | Noca_R0016 | - | 11 Arg tRNA |
| 838947 | 839022 | + | 76 | 119714272 | Noca_R0017 | - | 02 Ala tRNA |
| 950002 | 950080 | + | 79 | 119714272 | Noca_R0018 | - | 05 Gln tRNA |
| 981354 | 981430 | + | 77 | 119714272 | Noca_R0019 | - | 15 Leu tRNA |
| 1348591 | 1348958 | + | 368 | 119714272 | Noca_R0021 | - | |
| 1396961 | 1397045 | - | 85 | 119714272 | Noca_R0022 | - | 15 Leu tRNA |
| 1410376 | 1410451 | - | 76 | 119714272 | Noca_R0023 | - | 10 Lys tRNA |
| 1428940 | 1429015 | - | 76 | 119714272 | Noca_R0024 | - | 09 His tRNA |
| 1436447 | 1436523 | - | 77 | 119714272 | Noca_R0025 | - | 11 Arg tRNA |
| 1625605 | 1625681 | + | 77 | 119714272 | Noca_R0026 | - | 16 Met tRNA |
| 1693513 | 1693597 | + | 85 | 119714272 | Noca_R0027 | - | 16 Met tRNA |
| 1850749 | 1850821 | - | 73 | 119714272 | Noca_R0028 | - | 11 Arg tRNA |
| 1942709 | 1942784 | + | 76 | 119714272 | Noca_R0029 | - | 02 Ala tRNA |
| 2081097 | 2081169 | + | 73 | 119714272 | Noca_R0030 | - | 07 Asn tRNA |
| 2095934 | 2096010 | + | 77 | 119714272 | Noca_R0031 | - | 16 Met tRNA |
| 2113497 | 2115016 | + | 1520 | 119714272 | Noca_R0032 | - | 16S ribosomal RNA |
| 2115459 | 2118586 | + | 3128 | 119714272 | Noca_R0033 | - | 23S ribosomal RNA |
| 2118714 | 2118830 | + | 117 | 119714272 | Noca_R0034 | - | 5S ribosomal RNA |
| 2136462 | 2136536 | + | 75 | 119714272 | Noca_R0035 | - | 13 Val tRNA |
| 2178789 | 2179125 | - | 337 | 119714272 | Noca_R0036 | - | rnpB RNA |
| 2523391 | 2523465 | - | 75 | 119714272 | Noca_R0037 | - | 13 Val tRNA |
| 2523490 | 2523563 | - | 74 | 119714272 | Noca_R0038 | - | 19 Cys tRNA |
| 2523595 | 2523667 | - | 73 | 119714272 | Noca_R0039 | - | 01 Gly tRNA |
| 2525215 | 2525289 | + | 75 | 119714272 | Noca_R0040 | - | 13 Val tRNA |
| 2638556 | 2640075 | + | 1520 | 119714272 | Noca_R0041 | - | 16S ribosomal RNA |
| 2640518 | 2643645 | + | 3128 | 119714272 | Noca_R0042 | - | 23S ribosomal RNA |
| 2643773 | 2643889 | + | 117 | 119714272 | Noca_R0043 | - | 5S ribosomal RNA |
| 2671978 | 2672054 | + | 77 | 119714272 | Noca_R0044 | - | 03 Pro tRNA |
| 2788065 | 2788153 | - | 89 | 119714272 | Noca_R0045 | - | 15 Leu tRNA |
| 3215698 | 3215771 | + | 74 | 119714272 | Noca_R0046 | - | 15 Leu tRNA |
| 3539648 | 3539723 | - | 76 | 119714272 | Noca_R0048 | - | 04 Glu tRNA |
| 3539813 | 3539887 | - | 75 | 119714272 | Noca_R0049 | - | 05 Gln tRNA |
| 3690972 | 3691044 | - | 73 | 119714272 | Noca_R0050 | - | 03 Pro tRNA |
| 3691089 | 3691162 | - | 74 | 119714272 | Noca_R0051 | - | 01 Gly tRNA |
| 4231439 | 4231514 | - | 76 | 119714272 | Noca_R0053 | - | 12 Thr tRNA |
| 4514690 | 4514765 | + | 76 | 119714272 | Noca_R0054 | - | 10 Lys tRNA |
| 4533618 | 4533694 | - | 77 | 119714272 | Noca_R0055 | - | 06 Asp tRNA |
| 4533809 | 4533884 | - | 76 | 119714272 | Noca_R0056 | - | 04 Glu tRNA |
| 4534026 | 4534102 | + | 77 | 119714272 | Noca_R0057 | - | 17 Phe tRNA |
| 4668644 | 4668719 | + | 76 | 119714272 | Noca_R0058 | - | 01 Gly tRNA |

