Геном прокариот/Материалы:NC 008709
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LOCUS NC_008709 4559598 bp DNA circular BCT 08-AUG-2007
DEFINITION Psychromonas ingrahamii 37, complete genome.
ACCESSION NC_008709
VERSION NC_008709.1 GI:119943794
KEYWORDS .
SOURCE Psychromonas ingrahamii 37
ORGANISM Psychromonas ingrahamii 37
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
Psychromonadaceae; Psychromonas.
REFERENCE 1 (bases 1 to 4559598)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Staley,J.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Psychromonas ingrahamii 37
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4559598)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4559598)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Staley,J.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000510.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000833
Source DNA and bacteria available from James Staley
(jstaley@u.washington.edu)
Contacts: James Staley (jstaley@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 137 | 1675 | + | 1539 | 119943794 | Ping_R0001 | - | 16S ribosomal RNA |
| 1822 | 1898 | + | 77 | 119943794 | Ping_R0002 | - | 14 Ile tRNA |
| 1949 | 2024 | + | 76 | 119943794 | Ping_R0003 | - | 02 Ala tRNA |
| 2504 | 5395 | + | 2892 | 119943794 | Ping_R0004 | - | 23S ribosomal RNA |
| 5697 | 5812 | + | 116 | 119943794 | Ping_R0005 | - | 5S ribosomal RNA |
| 91410 | 92948 | + | 1539 | 119943794 | Ping_R0006 | - | 16S ribosomal RNA |
| 93088 | 93163 | + | 76 | 119943794 | Ping_R0007 | - | 04 Glu tRNA |
| 93714 | 96605 | + | 2892 | 119943794 | Ping_R0008 | - | 23S ribosomal RNA |
| 96807 | 96922 | + | 116 | 119943794 | Ping_R0009 | - | 5S ribosomal RNA |
| 275625 | 275700 | + | 76 | 119943794 | Ping_R0010 | - | 12 Thr tRNA |
| 275711 | 275794 | + | 84 | 119943794 | Ping_R0011 | - | 18 Tyr tRNA |
| 275906 | 275980 | + | 75 | 119943794 | Ping_R0012 | - | 01 Gly tRNA |
| 296678 | 298216 | + | 1539 | 119943794 | Ping_R0013 | - | 16S ribosomal RNA |
| 298420 | 298496 | + | 77 | 119943794 | Ping_R0014 | - | 14 Ile tRNA |
| 298547 | 298622 | + | 76 | 119943794 | Ping_R0015 | - | 02 Ala tRNA |
| 299135 | 302026 | + | 2892 | 119943794 | Ping_R0016 | - | 23S ribosomal RNA |
| 302228 | 302343 | + | 116 | 119943794 | Ping_R0017 | - | 5S ribosomal RNA |
| 302424 | 302543 | + | 120 | 119943794 | Ping_R0017a | - | 5S ribosomal RNA |
| 302550 | 302625 | + | 76 | 119943794 | Ping_R0018 | - | 12 Thr tRNA |
| 409144 | 409220 | - | 77 | 119943794 | Ping_R0019 | - | 16 Met tRNA |
| 481020 | 481095 | - | 76 | 119943794 | Ping_R0020 | - | 17 Phe tRNA |
| 481150 | 481225 | - | 76 | 119943794 | Ping_R0021 | - | 12 Thr tRNA |
| 481307 | 481382 | - | 76 | 119943794 | Ping_R0022 | - | 17 Phe tRNA |
| 507130 | 507214 | + | 85 | 119943794 | Ping_R0023 | - | 15 Leu tRNA |
| 629300 | 629376 | - | 77 | 119943794 | Ping_R0024 | - | 06 Asp tRNA |
| 629459 | 629535 | - | 77 | 119943794 | Ping_R0025 | - | 06 Asp tRNA |
| 629795 | 629871 | - | 77 | 119943794 | Ping_R0026 | - | 06 Asp tRNA |
| 629980 | 630056 | - | 77 | 119943794 | Ping_R0027 | - | 06 Asp tRNA |
| 630198 | 630274 | - | 77 | 119943794 | Ping_R0028 | - | 06 Asp tRNA |
| 646011 | 646086 | + | 76 | 119943794 | Ping_R0029 | - | 20 Trp tRNA |
| 740891 | 742429 | + | 1539 | 119943794 | Ping_R0030 | - | 16S ribosomal RNA |
| 742633 | 742709 | + | 77 | 119943794 | Ping_R0031 | - | 14 Ile tRNA |
| 742760 | 742835 | + | 76 | 119943794 | Ping_R0032 | - | 02 Ala tRNA |
| 743315 | 746206 | + | 2892 | 119943794 | Ping_R0033 | - | 23S ribosomal RNA |
| 746513 | 746628 | + | 116 | 119943794 | Ping_R0034 | - | 5S ribosomal RNA |
| 922914 | 922989 | + | 76 | 119943794 | Ping_R0035 | - | 10 Lys tRNA |
| 923154 | 923229 | + | 76 | 119943794 | Ping_R0036 | - | 10 Lys tRNA |
| 923325 | 923400 | + | 76 | 119943794 | Ping_R0037 | - | 10 Lys tRNA |
| 923510 | 923585 | + | 76 | 119943794 | Ping_R0038 | - | 10 Lys tRNA |
| 923681 | 923756 | + | 76 | 119943794 | Ping_R0039 | - | 10 Lys tRNA |
| 1017902 | 1017986 | + | 85 | 119943794 | Ping_R0040 | - | 15 Leu tRNA |
| 1033433 | 1034971 | + | 1539 | 119943794 | Ping_R0042 | - | 16S ribosomal RNA |
| 1035169 | 1035244 | + | 76 | 119943794 | Ping_R0043 | - | 04 Glu tRNA |
| 1035795 | 1038686 | + | 2892 | 119943794 | Ping_R0044 | - | 23S ribosomal RNA |
| 1038887 | 1039004 | + | 118 | 119943794 | Ping_R0045 | - | 5S ribosomal RNA |
| 1110422 | 1110497 | - | 76 | 119943794 | Ping_R0046 | - | 11 Arg tRNA |
| 1180465 | 1180540 | + | 76 | 119943794 | Ping_R0047 | - | 07 Asn tRNA |
| 1180819 | 1180894 | + | 76 | 119943794 | Ping_R0048 | - | 07 Asn tRNA |
| 1181095 | 1181170 | + | 76 | 119943794 | Ping_R0049 | - | 07 Asn tRNA |
| 1181425 | 1181500 | + | 76 | 119943794 | Ping_R0050 | - | 07 Asn tRNA |
| 1182466 | 1182542 | + | 77 | 119943794 | Ping_R0051 | - | 16 Met tRNA |
| 1182588 | 1182664 | + | 77 | 119943794 | Ping_R0052 | - | 16 Met tRNA |
| 1182710 | 1182786 | + | 77 | 119943794 | Ping_R0053 | - | 16 Met tRNA |
| 1182832 | 1182908 | + | 77 | 119943794 | Ping_R0054 | - | 16 Met tRNA |
| 1182954 | 1183030 | + | 77 | 119943794 | Ping_R0055 | - | 16 Met tRNA |
| 1183076 | 1183152 | + | 77 | 119943794 | Ping_R0056 | - | 16 Met tRNA |
| 1183198 | 1183274 | + | 77 | 119943794 | Ping_R0057 | - | 16 Met tRNA |
| 1192694 | 1194232 | + | 1539 | 119943794 | Ping_R0058 | - | 16S ribosomal RNA |
| 1194430 | 1194505 | + | 76 | 119943794 | Ping_R0059 | - | 04 Glu tRNA |
| 1195044 | 1197935 | + | 2892 | 119943794 | Ping_R0060 | - | 23S ribosomal RNA |
| 1198129 | 1198244 | + | 116 | 119943794 | Ping_R0061 | - | 5S ribosomal RNA |
| 1375887 | 1375970 | - | 84 | 119943794 | Ping_R0062 | - | 18 Tyr tRNA |
| 1469418 | 1469722 | + | 305 | 119943794 | Ping_R0063 | - | RNA component of RNaseP |
| 1484301 | 1484391 | + | 91 | 119943794 | Ping_R0064 | - | 08 Ser tRNA |
| 1484810 | 1484900 | + | 91 | 119943794 | Ping_R0065 | - | 08 Ser tRNA |
| 1488721 | 1488796 | + | 76 | 119943794 | Ping_R0066 | - | 01 Gly tRNA |
| 1488812 | 1488885 | + | 74 | 119943794 | Ping_R0067 | - | 19 Cys tRNA |
| 1488900 | 1488985 | + | 86 | 119943794 | Ping_R0068 | - | 15 Leu tRNA |
| 1611957 | 1612033 | - | 77 | 119943794 | Ping_R0069 | - | 16 Met tRNA |
| 1612152 | 1612236 | - | 85 | 119943794 | Ping_R0070 | - | 15 Leu tRNA |
| 1612244 | 1612318 | - | 75 | 119943794 | Ping_R0071 | - | 05 Gln tRNA |
| 1612455 | 1612529 | - | 75 | 119943794 | Ping_R0072 | - | 05 Gln tRNA |
| 1612584 | 1612668 | - | 85 | 119943794 | Ping_R0073 | - | 15 Leu tRNA |
| 1612774 | 1612850 | - | 77 | 119943794 | Ping_R0074 | - | 16 Met tRNA |
| 1957924 | 1958274 | - | 351 | 119943794 | Ping_R0075 | - | tmRNA |
| 1981065 | 1981140 | - | 76 | 119943794 | Ping_R0076 | - | 02 Ala tRNA |
| 1982968 | 1983043 | + | 76 | 119943794 | Ping_R0077 | - | 13 Val tRNA |
| 1983149 | 1983224 | + | 76 | 119943794 | Ping_R0078 | - | 13 Val tRNA |
| 1983330 | 1983405 | + | 76 | 119943794 | Ping_R0079 | - | 13 Val tRNA |
| 1983568 | 1983643 | + | 76 | 119943794 | Ping_R0080 | - | 13 Val tRNA |
| 1983804 | 1983879 | + | 76 | 119943794 | Ping_R0081 | - | 13 Val tRNA |
| 1984042 | 1984117 | + | 76 | 119943794 | Ping_R0082 | - | 13 Val tRNA |
| 1984280 | 1984355 | + | 76 | 119943794 | Ping_R0083 | - | 13 Val tRNA |
| 2402491 | 2402606 | - | 116 | 119943794 | Ping_R0084 | - | SRP RNA |
| 2727441 | 2727526 | - | 86 | 119943794 | Ping_R0085 | - | 15 Leu tRNA |
| 2727851 | 2727936 | - | 86 | 119943794 | Ping_R0086 | - | 15 Leu tRNA |
| 2756289 | 2756379 | - | 91 | 119943794 | Ping_R0087 | - | 08 Ser tRNA |
| 2870119 | 2870206 | - | 88 | 119943794 | Ping_R0088 | - | 08 Ser tRNA |
| 2928250 | 2928365 | - | 116 | 119943794 | Ping_R0089 | - | 5S ribosomal RNA |
| 2928672 | 2931563 | - | 2892 | 119943794 | Ping_R0090 | - | 23S ribosomal RNA |
| 2932194 | 2933732 | - | 1539 | 119943794 | Ping_R0091 | - | 16S ribosomal RNA |
| 3013781 | 3013856 | + | 76 | 119943794 | Ping_R0092 | - | 13 Val tRNA |
| 3122070 | 3122146 | - | 77 | 119943794 | Ping_R0093 | - | 03 Pro tRNA |
| 3122307 | 3122391 | - | 85 | 119943794 | Ping_R0094 | - | 15 Leu tRNA |
| 3122422 | 3122497 | - | 76 | 119943794 | Ping_R0095 | - | 09 His tRNA |
| 3170682 | 3170758 | - | 77 | 119943794 | Ping_R0096 | - | 11 Arg tRNA |
| 3171323 | 3171399 | - | 77 | 119943794 | Ping_R0097 | - | 03 Pro tRNA |
| 3174236 | 3174312 | - | 77 | 119943794 | Ping_R0098 | - | 03 Pro tRNA |
| 3227380 | 3227466 | + | 87 | 119943794 | Ping_R0099 | - | 15 Leu tRNA |
| 3255405 | 3255480 | + | 76 | 119943794 | Ping_R0100 | - | Xaa tRNA |
| 3395902 | 3396017 | - | 116 | 119943794 | Ping_R0101 | - | 5S ribosomal RNA |
| 3396320 | 3399211 | - | 2892 | 119943794 | Ping_R0102 | - | 23S ribosomal RNA |
| 3399843 | 3401379 | - | 1537 | 119943794 | Ping_R0103 | - | 16S ribosomal RNA |
| 3944298 | 3944413 | - | 116 | 119943794 | Ping_R0104 | - | 5S ribosomal RNA |
| 3944718 | 3947609 | - | 2892 | 119943794 | Ping_R0105 | - | 23S ribosomal RNA |
| 3948158 | 3948233 | - | 76 | 119943794 | Ping_R0106 | - | 04 Glu tRNA |
| 3948373 | 3949911 | - | 1539 | 119943794 | Ping_R0107 | - | 16S ribosomal RNA |
| 4051006 | 4051121 | - | 116 | 119943794 | Ping_R0108 | - | 5S ribosomal RNA |
| 4051421 | 4054312 | - | 2892 | 119943794 | Ping_R0109 | - | 23S ribosomal RNA |
| 4054943 | 4056481 | - | 1539 | 119943794 | Ping_R0110 | - | 16S ribosomal RNA |
| 4122509 | 4122584 | - | 76 | 119943794 | Ping_R0111 | - | 01 Gly tRNA |
| 4122618 | 4122693 | - | 76 | 119943794 | Ping_R0112 | - | 01 Gly tRNA |
| 4122737 | 4122812 | - | 76 | 119943794 | Ping_R0113 | - | 01 Gly tRNA |
| 4171471 | 4171547 | - | 77 | 119943794 | Ping_R0114 | - | 11 Arg tRNA |
| 4171627 | 4171703 | - | 77 | 119943794 | Ping_R0115 | - | 11 Arg tRNA |
| 4171766 | 4171842 | - | 77 | 119943794 | Ping_R0116 | - | 11 Arg tRNA |
| 4171861 | 4171953 | - | 93 | 119943794 | Ping_R0117 | - | 08 Ser tRNA |
| 4222013 | 4222089 | - | 77 | 119943794 | Ping_R0118 | - | 03 Pro tRNA |
| 4222129 | 4222204 | - | 76 | 119943794 | Ping_R0119 | - | 09 His tRNA |
| 4222246 | 4222322 | - | 77 | 119943794 | Ping_R0120 | - | 11 Arg tRNA |

