Геном прокариот/Материалы:NC 008752
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LOCUS NC_008752 5352772 bp DNA circular BCT 05-JAN-2007
DEFINITION Acidovorax avenae subsp. citrulli AAC00-1, complete genome.
ACCESSION NC_008752
VERSION NC_008752.1 GI:120608714
KEYWORDS .
SOURCE Acidovorax avenae subsp. citrulli AAC00-1
ORGANISM Acidovorax avenae subsp. citrulli AAC00-1
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Comamonadaceae; Acidovorax.
REFERENCE 1 (bases 1 to 5352772)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T.,
Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Acidovorax avenae subsp. citrulli AAC00-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5352772)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-JAN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5352772)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T.,
Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000512.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4001427
Source DNA and bacteria available from David Stahl
(dastahl@u.washington.edu)
Contacts: David Stahl (dastahl@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 421004 | 421079 | + | 76 | 120608714 | Aave_R0001 | - | 11 Arg tRNA |
| 678492 | 678568 | + | 77 | 120608714 | Aave_R0002 | - | 16 Met tRNA |
| 850157 | 850431 | + | 275 | 120608714 | Aave_R0003 | - | RNase P |
| 953378 | 953454 | + | 77 | 120608714 | Aave_R0004 | - | 16 Met tRNA |
| 1387775 | 1387859 | + | 85 | 120608714 | Aave_R0005 | - | 15 Leu tRNA |
| 1577962 | 1579483 | + | 1522 | 120608714 | Aave_R0006 | - | 16S ribosomal RNA |
| 1579555 | 1579631 | + | 77 | 120608714 | Aave_R0007 | - | 14 Ile tRNA |
| 1579663 | 1579738 | + | 76 | 120608714 | Aave_R0008 | - | 02 Ala tRNA |
| 1580100 | 1582980 | + | 2881 | 120608714 | Aave_R0009 | - | 23S ribosomal RNA |
| 1583093 | 1583205 | + | 113 | 120608714 | Aave_R0010 | - | 5S ribosomal RNA |
| 1604244 | 1604319 | - | 76 | 120608714 | Aave_R0011 | - | 01 Gly tRNA |
| 1604432 | 1604505 | - | 74 | 120608714 | Aave_R0012 | - | 19 Cys tRNA |
| 1604561 | 1604636 | - | 76 | 120608714 | Aave_R0013 | - | 01 Gly tRNA |
| 1610765 | 1610851 | - | 87 | 120608714 | Aave_R0014 | - | 15 Leu tRNA |
| 1643270 | 1643361 | + | 92 | 120608714 | Aave_R0015 | - | 15 Leu tRNA |
| 1756051 | 1756127 | + | 77 | 120608714 | Aave_R0016 | - | 13 Val tRNA |
| 1828502 | 1828577 | + | 76 | 120608714 | Aave_R0017 | - | 13 Val tRNA |
| 1897374 | 1897449 | + | 76 | 120608714 | Aave_R0018 | - | 09 His tRNA |
| 1920321 | 1920397 | + | 77 | 120608714 | Aave_R0019 | - | 16 Met tRNA |
| 1945301 | 1945377 | - | 77 | 120608714 | Aave_R0020 | - | 11 Arg tRNA |
| 1997788 | 1997863 | - | 76 | 120608714 | Aave_R0021 | - | 12 Thr tRNA |
| 2021784 | 2021859 | + | 76 | 120608714 | Aave_R0022 | - | 02 Ala tRNA |
| 2021892 | 2021967 | + | 76 | 120608714 | Aave_R0023 | - | 04 Glu tRNA |
| 2022020 | 2022096 | + | 77 | 120608714 | Aave_R0024 | - | 06 Asp tRNA |
| 2022170 | 2022245 | + | 76 | 120608714 | Aave_R0025 | - | 02 Ala tRNA |
| 2022279 | 2022354 | + | 76 | 120608714 | Aave_R0026 | - | 04 Glu tRNA |
| 2022406 | 2022482 | + | 77 | 120608714 | Aave_R0027 | - | 06 Asp tRNA |
| 2068771 | 2068846 | - | 76 | 120608714 | Aave_R0028 | - | 10 Lys tRNA |
| 2156283 | 2156367 | - | 85 | 120608714 | Aave_R0029 | - | 15 Leu tRNA |
| 2554319 | 2554411 | + | 93 | 120608714 | Aave_R0030 | - | 08 Ser tRNA |
| 2673714 | 2673788 | + | 75 | 120608714 | Aave_R0031 | - | 13 Val tRNA |
| 2673833 | 2673907 | + | 75 | 120608714 | Aave_R0032 | - | 13 Val tRNA |
| 2770121 | 2770194 | - | 74 | 120608714 | Aave_R0033 | - | 01 Gly tRNA |
| 2904776 | 2904876 | - | 101 | 120608714 | Aave_R0034 | - | SRP RNA; RNA component of signal recognition particle |
| 3143442 | 3143518 | - | 77 | 120608714 | Aave_R0035 | - | 03 Pro tRNA |
| 3243131 | 3243207 | - | 77 | 120608714 | Aave_R0036 | - | 03 Pro tRNA |
| 3289237 | 3289321 | + | 85 | 120608714 | Aave_R0037 | - | 15 Leu tRNA |
| 3289523 | 3289607 | + | 85 | 120608714 | Aave_R0038 | - | 15 Leu tRNA |
| 3427982 | 3428057 | + | 76 | 120608714 | Aave_R0039 | - | 07 Asn tRNA |
| 3428117 | 3428192 | + | 76 | 120608714 | Aave_R0040 | - | 07 Asn tRNA |
| 3604592 | 3604681 | + | 90 | 120608714 | Aave_R0041 | - | 08 Ser tRNA |
| 3621588 | 3621963 | - | 376 | 120608714 | Aave_R0042 | - | |
| 3759486 | 3759561 | - | 76 | 120608714 | Aave_R0043 | - | 10 Lys tRNA |
| 3907100 | 3907187 | + | 88 | 120608714 | Aave_R0044 | - | 08 Ser tRNA |
| 3958339 | 3958415 | - | 77 | 120608714 | Aave_R0045 | - | 11 Arg tRNA |
| 3983496 | 3983572 | + | 77 | 120608714 | Aave_R0046 | - | 05 Gln tRNA |
| 4053448 | 4053524 | + | 77 | 120608714 | Aave_R0047 | - | 03 Pro tRNA |
| 4069768 | 4069843 | - | 76 | 120608714 | Aave_R0048 | - | 12 Thr tRNA |
| 4186414 | 4186503 | - | 90 | 120608714 | Aave_R0049 | - | 08 Ser tRNA |
| 4387507 | 4387581 | + | 75 | 120608714 | Aave_R0050 | - | 11 Arg tRNA |
| 4859361 | 4859473 | - | 113 | 120608714 | Aave_R0051 | - | 5S ribosomal RNA |
| 4859586 | 4862466 | - | 2881 | 120608714 | Aave_R0052 | - | 23S ribosomal RNA |
| 4862828 | 4862903 | - | 76 | 120608714 | Aave_R0053 | - | 02 Ala tRNA |
| 4862935 | 4863011 | - | 77 | 120608714 | Aave_R0054 | - | 14 Ile tRNA |
| 4863083 | 4864604 | - | 1522 | 120608714 | Aave_R0055 | - | 16S ribosomal RNA |
| 5027995 | 5028070 | - | 76 | 120608714 | Aave_R0056 | - | 17 Phe tRNA |
| 5046274 | 5046349 | - | 76 | 120608714 | Aave_R0057 | - | 20 Trp tRNA |
| 5047623 | 5047697 | - | 75 | 120608714 | Aave_R0058 | - | 12 Thr tRNA |
| 5047733 | 5047806 | - | 74 | 120608714 | Aave_R0059 | - | 01 Gly tRNA |
| 5047849 | 5047934 | - | 86 | 120608714 | Aave_R0060 | - | 18 Tyr tRNA |
| 5048074 | 5048186 | - | 113 | 120608714 | Aave_R0061 | - | 5S ribosomal RNA |
| 5048299 | 5051179 | - | 2881 | 120608714 | Aave_R0062 | - | 23S ribosomal RNA |
| 5051541 | 5051616 | - | 76 | 120608714 | Aave_R0063 | - | 02 Ala tRNA |
| 5051648 | 5051724 | - | 77 | 120608714 | Aave_R0064 | - | 14 Ile tRNA |
| 5051796 | 5053317 | - | 1522 | 120608714 | Aave_R0065 | - | 16S ribosomal RNA |

