Геном прокариот/Материалы:NC 008781
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LOCUS NC_008781 4410291 bp DNA circular BCT 11-JAN-2007
DEFINITION Polaromonas naphthalenivorans CJ2, complete genome.
ACCESSION NC_008781
VERSION NC_008781.1 GI:121602919
KEYWORDS .
SOURCE Polaromonas naphthalenivorans CJ2
ORGANISM Polaromonas naphthalenivorans CJ2
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Comamonadaceae; Polaromonas.
REFERENCE 1 (bases 1 to 4410291)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D.R., Brettin,T., Bruce,D., Han,C., Tapia,R., Brainard,J.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Madsen,E.L. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome1 of Polaromonas naphthalenivorans
CJ2
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4410291)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4410291)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D.R., Brettin,T., Bruce,D., Han,C., Tapia,R., Brainard,J.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Madsen,E.L. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000529.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000361
Source DNA and bacteria available from Eugene L. Madsen
(elm3@cornell.edu)
Contacts: Eugene L. Madsen (elm3@cornell.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 265115 | 265190 | + | 76 | 121602919 | Pnap_R0002 | - | 11 Arg tRNA |
| 343179 | 343255 | + | 77 | 121602919 | Pnap_R0003 | - | 16 Met tRNA |
| 425434 | 426956 | + | 1523 | 121602919 | Pnap_R0004 | - | 16S ribosomal RNA |
| 427076 | 427152 | + | 77 | 121602919 | Pnap_R0005 | - | 14 Ile tRNA |
| 427181 | 427256 | + | 76 | 121602919 | Pnap_R0006 | - | 02 Ala tRNA |
| 427603 | 430484 | + | 2882 | 121602919 | Pnap_R0007 | - | 23S ribosomal RNA |
| 430649 | 430761 | + | 113 | 121602919 | Pnap_R0008 | - | 5S ribosomal RNA |
| 759510 | 759585 | + | 76 | 121602919 | Pnap_R0009 | - | 12 Thr tRNA |
| 796908 | 796984 | + | 77 | 121602919 | Pnap_R0010 | - | 03 Pro tRNA |
| 836741 | 836817 | + | 77 | 121602919 | Pnap_R0011 | - | 11 Arg tRNA |
| 907832 | 907906 | - | 75 | 121602919 | Pnap_R0012 | - | 11 Arg tRNA |
| 950908 | 950984 | - | 77 | 121602919 | Pnap_R0013 | - | 05 Gln tRNA |
| 963115 | 963191 | + | 77 | 121602919 | Pnap_R0014 | - | 16 Met tRNA |
| 1021827 | 1021916 | - | 90 | 121602919 | Pnap_R0015 | - | 08 Ser tRNA |
| 1131583 | 1131658 | - | 76 | 121602919 | Pnap_R0016 | - | 12 Thr tRNA |
| 1162395 | 1162470 | + | 76 | 121602919 | Pnap_R0017 | - | 02 Ala tRNA |
| 1162537 | 1162612 | + | 76 | 121602919 | Pnap_R0018 | - | 04 Glu tRNA |
| 1162693 | 1162769 | + | 77 | 121602919 | Pnap_R0019 | - | 06 Asp tRNA |
| 1162892 | 1162967 | + | 76 | 121602919 | Pnap_R0020 | - | 04 Glu tRNA |
| 1163048 | 1163124 | + | 77 | 121602919 | Pnap_R0021 | - | 06 Asp tRNA |
| 1512447 | 1512531 | + | 85 | 121602919 | Pnap_R0022 | - | 15 Leu tRNA |
| 1721370 | 1721445 | + | 76 | 121602919 | Pnap_R0023 | - | 13 Val tRNA |
| 1723499 | 1723574 | + | 76 | 121602919 | Pnap_R0024 | - | 09 His tRNA |
| 1762664 | 1762765 | - | 102 | 121602919 | Pnap_R0025 | - | SRP RNA |
| 1849669 | 1851191 | + | 1523 | 121602919 | Pnap_R0026 | - | 16S ribosomal RNA |
| 1851311 | 1851387 | + | 77 | 121602919 | Pnap_R0027 | - | 14 Ile tRNA |
| 1851416 | 1851491 | + | 76 | 121602919 | Pnap_R0028 | - | 02 Ala tRNA |
| 1851838 | 1854719 | + | 2882 | 121602919 | Pnap_R0029 | - | 23S ribosomal RNA |
| 1854884 | 1854996 | + | 113 | 121602919 | Pnap_R0030 | - | 5S ribosomal RNA |
| 1976097 | 1976172 | + | 76 | 121602919 | Pnap_R0031 | - | 07 Asn tRNA |
| 2031833 | 2031909 | + | 77 | 121602919 | Pnap_R0032 | - | 03 Pro tRNA |
| 2031951 | 2032027 | + | 77 | 121602919 | Pnap_R0033 | - | 11 Arg tRNA |
| 2152465 | 2152554 | + | 90 | 121602919 | Pnap_R0034 | - | 08 Ser tRNA |
| 2173508 | 2173583 | - | 76 | 121602919 | Pnap_R0035 | - | 10 Lys tRNA |
| 2173594 | 2173669 | - | 76 | 121602919 | Pnap_R0036 | - | 10 Lys tRNA |
| 2426393 | 2426467 | - | 75 | 121602919 | Pnap_R0037 | - | 13 Val tRNA |
| 2577811 | 2577895 | + | 85 | 121602919 | Pnap_R0038 | - | 15 Leu tRNA |
| 2673898 | 2673974 | - | 77 | 121602919 | Pnap_R0039 | - | 13 Val tRNA |
| 2785718 | 2785791 | + | 74 | 121602919 | Pnap_R0040 | - | 01 Gly tRNA |
| 2930517 | 2930900 | - | 384 | 121602919 | Pnap_R0041 | - | tmRNA |
| 2988726 | 2988802 | - | 77 | 121602919 | Pnap_R0042 | - | 03 Pro tRNA |
| 3039526 | 3039618 | - | 93 | 121602919 | Pnap_R0043 | - | 08 Ser tRNA |
| 3112867 | 3112953 | - | 87 | 121602919 | Pnap_R0044 | - | 15 Leu tRNA |
| 3113043 | 3113116 | - | 74 | 121602919 | Pnap_R0045 | - | 19 Cys tRNA |
| 3113177 | 3113252 | - | 76 | 121602919 | Pnap_R0046 | - | 01 Gly tRNA |
| 3113334 | 3113407 | - | 74 | 121602919 | Pnap_R0047 | - | 19 Cys tRNA |
| 3113467 | 3113542 | - | 76 | 121602919 | Pnap_R0048 | - | 01 Gly tRNA |
| 3119726 | 3119812 | - | 87 | 121602919 | Pnap_R0049 | - | 15 Leu tRNA |
| 3371931 | 3372015 | + | 85 | 121602919 | Pnap_R0050 | - | 15 Leu tRNA |
| 3531928 | 3532015 | - | 88 | 121602919 | Pnap_R0051 | - | 08 Ser tRNA |
| 3570807 | 3570883 | + | 77 | 121602919 | Pnap_R0052 | - | 16 Met tRNA |
| 3654548 | 3654812 | - | 265 | 121602919 | Pnap_R0053 | - | RNA component of RNaseP |
| 3860274 | 3860349 | - | 76 | 121602919 | Pnap_R0054 | - | 17 Phe tRNA |
| 3881888 | 3881963 | - | 76 | 121602919 | Pnap_R0055 | - | 20 Trp tRNA |
| 3883254 | 3883328 | - | 75 | 121602919 | Pnap_R0056 | - | 12 Thr tRNA |
| 3883400 | 3883473 | - | 74 | 121602919 | Pnap_R0057 | - | 01 Gly tRNA |
| 3883556 | 3883641 | - | 86 | 121602919 | Pnap_R0058 | - | 18 Tyr tRNA |

