Геном прокариот/Материалы:NC 008782
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LOCUS NC_008782 4448856 bp DNA circular BCT 11-JAN-2007
DEFINITION Acidovorax sp. JS42, complete genome.
ACCESSION NC_008782
VERSION NC_008782.1 GI:121592436
KEYWORDS .
SOURCE Acidovorax sp. JS42
ORGANISM Acidovorax sp. JS42
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Comamonadaceae; Acidovorax.
REFERENCE 1 (bases 1 to 4448856)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome1 of Acidovorax sp. JS42
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4448856)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4448856)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000539.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4001426
Source DNA and bacteria available from David Stahl
(dastahl@u.washington.edu)
Contacts: David Stahl (dastahl@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 333762 | 333837 | + | 76 | 121592436 | Ajs_R0001 | - | 11 Arg tRNA |
| 414117 | 414193 | + | 77 | 121592436 | Ajs_R0002 | - | 16 Met tRNA |
| 836662 | 836737 | + | 76 | 121592436 | Ajs_R0003 | - | 12 Thr tRNA |
| 887009 | 887085 | - | 77 | 121592436 | Ajs_R0004 | - | 03 Pro tRNA |
| 944869 | 944945 | - | 77 | 121592436 | Ajs_R0005 | - | 05 Gln tRNA |
| 992918 | 992994 | - | 77 | 121592436 | Ajs_R0006 | - | 11 Arg tRNA |
| 998729 | 998813 | + | 85 | 121592436 | Ajs_R0007 | - | 15 Leu tRNA |
| 1158744 | 1158831 | - | 88 | 121592436 | Ajs_R0008 | - | 08 Ser tRNA |
| 1248578 | 1250099 | + | 1522 | 121592436 | Ajs_R0009 | - | 16S ribosomal RNA |
| 1250181 | 1250257 | + | 77 | 121592436 | Ajs_R0010 | - | 14 Ile tRNA |
| 1250292 | 1250367 | + | 76 | 121592436 | Ajs_R0011 | - | 02 Ala tRNA |
| 1250707 | 1253585 | + | 2879 | 121592436 | Ajs_R0012 | - | 23S ribosomal RNA |
| 1253703 | 1253815 | + | 113 | 121592436 | Ajs_R0013 | - | 5S ribosomal RNA |
| 1281620 | 1281706 | + | 87 | 121592436 | Ajs_R0014 | - | 15 Leu tRNA |
| 1287848 | 1287923 | + | 76 | 121592436 | Ajs_R0015 | - | 01 Gly tRNA |
| 1408450 | 1408523 | + | 74 | 121592436 | Ajs_R0016 | - | 19 Cys tRNA |
| 1408638 | 1408713 | + | 76 | 121592436 | Ajs_R0017 | - | 01 Gly tRNA |
| 1659919 | 1659994 | + | 76 | 121592436 | Ajs_R0018 | - | 02 Ala tRNA |
| 1660026 | 1660101 | + | 76 | 121592436 | Ajs_R0019 | - | 04 Glu tRNA |
| 1660159 | 1660235 | + | 77 | 121592436 | Ajs_R0020 | - | 06 Asp tRNA |
| 1684418 | 1684510 | + | 93 | 121592436 | Ajs_R0021 | - | 08 Ser tRNA |
| 1735478 | 1735554 | + | 77 | 121592436 | Ajs_R0022 | - | 03 Pro tRNA |
| 1795778 | 1795853 | + | 76 | 121592436 | Ajs_R0023 | - | 10 Lys tRNA |
| 1870836 | 1870925 | + | 90 | 121592436 | Ajs_R0024 | - | 08 Ser tRNA |
| 2077471 | 2077544 | - | 74 | 121592436 | Ajs_R0025 | - | 01 Gly tRNA |
| 2261208 | 2261282 | - | 75 | 121592436 | Ajs_R0026 | - | 13 Val tRNA |
| 2261322 | 2261396 | - | 75 | 121592436 | Ajs_R0027 | - | 13 Val tRNA |
| 2435001 | 2435076 | + | 76 | 121592436 | Ajs_R0028 | - | 07 Asn tRNA |
| 2435129 | 2435204 | + | 76 | 121592436 | Ajs_R0029 | - | 07 Asn tRNA |
| 2494212 | 2494312 | + | 101 | 121592436 | Ajs_R0030 | - | SRP RNA |
| 2545780 | 2545856 | - | 77 | 121592436 | Ajs_R0031 | - | 03 Pro tRNA |
| 2618142 | 2618517 | - | 376 | 121592436 | Ajs_R0032 | - | tmRNA |
| 2734229 | 2734313 | + | 85 | 121592436 | Ajs_R0033 | - | 15 Leu tRNA |
| 2734494 | 2734578 | + | 85 | 121592436 | Ajs_R0034 | - | 15 Leu tRNA |
| 2779715 | 2779791 | + | 77 | 121592436 | Ajs_R0035 | - | 11 Arg tRNA |
| 2791155 | 2791230 | - | 76 | 121592436 | Ajs_R0036 | - | 09 His tRNA |
| 2793262 | 2793337 | - | 76 | 121592436 | Ajs_R0037 | - | 13 Val tRNA |
| 2895213 | 2895289 | - | 77 | 121592436 | Ajs_R0038 | - | 06 Asp tRNA |
| 2895336 | 2895411 | - | 76 | 121592436 | Ajs_R0039 | - | 04 Glu tRNA |
| 2895444 | 2895519 | - | 76 | 121592436 | Ajs_R0040 | - | 02 Ala tRNA |
| 2923874 | 2923949 | + | 76 | 121592436 | Ajs_R0041 | - | 12 Thr tRNA |
| 3328249 | 3328325 | - | 77 | 121592436 | Ajs_R0042 | - | 13 Val tRNA |
| 3523853 | 3523928 | + | 76 | 121592436 | Ajs_R0043 | - | 10 Lys tRNA |
| 3633028 | 3633117 | - | 90 | 121592436 | Ajs_R0044 | - | 08 Ser tRNA |
| 3754391 | 3754465 | + | 75 | 121592436 | Ajs_R0045 | - | 11 Arg tRNA |
| 3828784 | 3828860 | + | 77 | 121592436 | Ajs_R0046 | - | 16 Met tRNA |
| 3943283 | 3943561 | - | 279 | 121592436 | Ajs_R0047 | - | RNaseP RNA |
| 4015747 | 4015879 | - | 133 | 121592436 | Ajs_R0048 | - | 5S ribosomal RNA |
| 4015997 | 4018875 | - | 2879 | 121592436 | Ajs_R0049 | - | 23S ribosomal RNA |
| 4019215 | 4019290 | - | 76 | 121592436 | Ajs_R0050 | - | 02 Ala tRNA |
| 4019325 | 4019401 | - | 77 | 121592436 | Ajs_R0051 | - | 14 Ile tRNA |
| 4019483 | 4021004 | - | 1522 | 121592436 | Ajs_R0052 | - | 16S ribosomal RNA |
| 4132026 | 4132101 | - | 76 | 121592436 | Ajs_R0053 | - | 17 Phe tRNA |
| 4150130 | 4150205 | - | 76 | 121592436 | Ajs_R0054 | - | 20 Trp tRNA |
| 4151487 | 4151561 | - | 75 | 121592436 | Ajs_R0055 | - | 12 Thr tRNA |
| 4151603 | 4151676 | - | 74 | 121592436 | Ajs_R0056 | - | 01 Gly tRNA |
| 4151725 | 4151810 | - | 86 | 121592436 | Ajs_R0057 | - | 18 Tyr tRNA |
| 4153495 | 4153607 | - | 113 | 121592436 | Ajs_R0058 | - | 5S ribosomal RNA |
| 4153725 | 4156603 | - | 2879 | 121592436 | Ajs_R0059 | - | 23S ribosomal RNA |
| 4156943 | 4157018 | - | 76 | 121592436 | Ajs_R0060 | - | 02 Ala tRNA |
| 4157053 | 4157129 | - | 77 | 121592436 | Ajs_R0061 | - | 14 Ile tRNA |
| 4157211 | 4158732 | - | 1522 | 121592436 | Ajs_R0062 | - | 16S ribosomal RNA |
| 4301742 | 4301818 | - | 77 | 121592436 | Ajs_R0064 | - | 11 Arg tRNA |

