Геном прокариот/Материалы:NC 008789
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LOCUS NC_008789 2678452 bp DNA circular BCT 13-JAN-2007
DEFINITION Halorhodospira halophila SL1, complete genome.
ACCESSION NC_008789
VERSION NC_008789.1 GI:121996810
KEYWORDS .
SOURCE Halorhodospira halophila SL1
ORGANISM Halorhodospira halophila SL1
Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
Ectothiorhodospiraceae; Halorhodospira.
REFERENCE 1 (bases 1 to 2678452)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hoff,W.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Halorhodospira halophila SL1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2678452)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2678452)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hoff,W.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000544.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000187
Source DNA and bacteria available from Wouter Hoff
(whoff@midway.uchicago.edu)
Contacts: Wouter Hoff (whoff@midway.uchicago.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 22358 | 22431 | + | 74 | 121996810 | Hhal_R0001 | - | 19 Cys tRNA |
| 22494 | 22578 | + | 85 | 121996810 | Hhal_R0002 | - | 15 Leu tRNA |
| 119800 | 119876 | - | 77 | 121996810 | Hhal_R0003 | - | 04 Glu tRNA |
| 234447 | 234536 | - | 90 | 121996810 | Hhal_R0004 | - | 08 Ser tRNA |
| 267061 | 267178 | - | 118 | 121996810 | Hhal_R0005 | - | SRP RNA |
| 267185 | 267272 | - | 88 | 121996810 | Hhal_R0006 | - | 08 Ser tRNA |
| 376737 | 376853 | - | 117 | 121996810 | Hhal_R0007 | - | 5S ribosomal RNA |
| 376939 | 379842 | - | 2904 | 121996810 | Hhal_R0008 | - | 23S ribosomal RNA |
| 380025 | 381562 | - | 1538 | 121996810 | Hhal_R0009 | - | 16S ribosomal RNA |
| 494451 | 494527 | + | 77 | 121996810 | Hhal_R0010 | - | 13 Val tRNA |
| 501892 | 501968 | + | 77 | 121996810 | Hhal_R0011 | - | 03 Pro tRNA |
| 614224 | 614298 | + | 75 | 121996810 | Hhal_R0012 | - | 07 Asn tRNA |
| 677797 | 677873 | - | 77 | 121996810 | Hhal_R0013 | - | 06 Asp tRNA |
| 677921 | 677996 | - | 76 | 121996810 | Hhal_R0014 | - | 13 Val tRNA |
| 684545 | 684634 | - | 90 | 121996810 | Hhal_R0015 | - | 15 Leu tRNA |
| 689998 | 690074 | + | 77 | 121996810 | Hhal_R0016 | - | 03 Pro tRNA |
| 690116 | 690192 | + | 77 | 121996810 | Hhal_R0017 | - | 11 Arg tRNA |
| 690228 | 690303 | + | 76 | 121996810 | Hhal_R0018 | - | 09 His tRNA |
| 690405 | 690480 | + | 76 | 121996810 | Hhal_R0019 | - | 10 Lys tRNA |
| 742426 | 742512 | + | 87 | 121996810 | Hhal_R0020 | - | 15 Leu tRNA |
| 760849 | 760923 | + | 75 | 121996810 | Hhal_R0021 | - | 04 Glu tRNA |
| 816303 | 816378 | + | 76 | 121996810 | Hhal_R0022 | - | 02 Ala tRNA |
| 824039 | 824115 | - | 77 | 121996810 | Hhal_R0023 | - | 11 Arg tRNA |
| 944492 | 944567 | - | 76 | 121996810 | Hhal_R0024 | - | 20 Trp tRNA |
| 945881 | 945956 | - | 76 | 121996810 | Hhal_R0025 | - | 12 Thr tRNA |
| 945995 | 946068 | - | 74 | 121996810 | Hhal_R0026 | - | 01 Gly tRNA |
| 946130 | 946214 | - | 85 | 121996810 | Hhal_R0027 | - | 18 Tyr tRNA |
| 946263 | 946338 | - | 76 | 121996810 | Hhal_R0028 | - | 12 Thr tRNA |
| 948747 | 948863 | - | 117 | 121996810 | Hhal_R0029 | - | 5S ribosomal RNA |
| 948948 | 951851 | - | 2904 | 121996810 | Hhal_R0030 | - | 23S ribosomal RNA |
| 952021 | 952096 | - | 76 | 121996810 | Hhal_R0031 | - | 02 Ala tRNA |
| 952108 | 952184 | - | 77 | 121996810 | Hhal_R0032 | - | 14 Ile tRNA |
| 952248 | 953785 | - | 1538 | 121996810 | Hhal_R0033 | - | 16S ribosomal RNA |
| 1058093 | 1058169 | - | 77 | 121996810 | Hhal_R0034 | - | 16 Met tRNA |
| 1062168 | 1062242 | - | 75 | 121996810 | Hhal_R0035 | - | 05 Gln tRNA |
| 1194816 | 1194891 | + | 76 | 121996810 | Hhal_R0036 | - | 16 Met tRNA |
| 1237862 | 1237938 | - | 77 | 121996810 | Hhal_R0037 | - | 11 Arg tRNA |
| 1242463 | 1242538 | + | 76 | 121996810 | Hhal_R0038 | - | 17 Phe tRNA |
| 1386854 | 1386929 | - | 76 | 121996810 | Hhal_R0039 | - | 02 Ala tRNA |
| 1388532 | 1388606 | + | 75 | 121996810 | Hhal_R0040 | - | 13 Val tRNA |
| 1605457 | 1605810 | + | 354 | 121996810 | Hhal_R0042 | - | tmRNA |
| 1721851 | 1721927 | - | 77 | 121996810 | Hhal_R0043 | - | 16 Met tRNA |
| 1803569 | 1803645 | - | 77 | 121996810 | Hhal_R0044 | - | 11 Arg tRNA |
| 1803697 | 1803786 | - | 90 | 121996810 | Hhal_R0045 | - | 08 Ser tRNA |
| 1877309 | 1877394 | + | 86 | 121996810 | Hhal_R0046 | - | 15 Leu tRNA |
| 1924613 | 1924689 | - | 77 | 121996810 | Hhal_R0047 | - | 16 Met tRNA |
| 1939575 | 1939659 | - | 85 | 121996810 | Hhal_R0048 | - | 15 Leu tRNA |
| 1998217 | 1998292 | + | 76 | 121996810 | Hhal_R0049 | - | 12 Thr tRNA |
| 2020663 | 2020739 | - | 77 | 121996810 | Hhal_R0050 | - | 03 Pro tRNA |
| 2046979 | 2047067 | + | 89 | 121996810 | Hhal_R0051 | - | 08 Ser tRNA |
| 2280907 | 2280980 | - | 74 | 121996810 | Hhal_R0052 | - | 05 Gln tRNA |
| 2306516 | 2306817 | + | 302 | 121996810 | Hhal_R0053 | - | RnaseP RNA |
| 2348651 | 2348725 | - | 75 | 121996810 | Hhal_R0054 | - | 01 Gly tRNA |
| 2433936 | 2434008 | + | 73 | 121996810 | Hhal_R0055 | - | 10 Lys tRNA |
| 2637699 | 2637772 | + | 74 | 121996810 | Hhal_R0057 | - | 01 Gly tRNA |

