Геном прокариот/Материалы:NC 008825
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LOCUS NC_008825 4044195 bp DNA circular BCT 27-FEB-2007
DEFINITION Methylibium petroleiphilum PM1, complete genome.
ACCESSION NC_008825
VERSION NC_008825.1 GI:124265193
KEYWORDS .
SOURCE Methylibium petroleiphilum PM1
ORGANISM Methylibium petroleiphilum PM1
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Methylibium.
REFERENCE 1 (bases 1 to 4044195)
AUTHORS Kane,S.R., Chakicherla,A.Y., Chain,P.S., Schmidt,R., Shin,M.W.,
Legler,T.C., Scow,K.M., Larimer,F.W., Lucas,S.M., Richardson,P.M.
and Hristova,K.R.
CONSRTM US DOE Joint Genome Institute
TITLE Whole-Genome Analysis of Methyl tert-Butyl Ether (MTBE)-Degrading
Beta-Proteobacterium Methylibium petroleiphilum PM1
JOURNAL J. Bacteriol. 189 (5), 1931-1945 (2007)
PUBMED 17158667
REFERENCE 2 (bases 1 to 4044195)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L. and Richardson,P.
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFERENCE 3 (bases 1 to 4044195)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (18-DEC-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000555.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3436553
Source DNA and bacteria available from Staci Kane (kane11@llnl.gov)
Contacts: Staci Kane (kane11@llnl.gov)
Krassimira R. Hristova (krhristova@ucdavis.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL,JGI-PGF and JGI-LLNL
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 148607 | 148683 | + | 77 | 124265193 | Mpe_AR0028 | - | 03 Pro tRNA |
| 209062 | 209152 | - | 91 | 124265193 | Mpe_AR0029 | - | 08 Ser tRNA |
| 225810 | 225885 | - | 76 | 124265193 | Mpe_AR0030 | - | 09 His tRNA |
| 227996 | 228071 | - | 76 | 124265193 | Mpe_AR0031 | - | 13 Val tRNA |
| 259322 | 259406 | + | 85 | 124265193 | Mpe_AR0032 | - | 15 Leu tRNA |
| 352302 | 353832 | + | 1531 | 124265193 | Mpe_A0326a | - | 16S ribosomal RNA |
| 354393 | 357269 | + | 2877 | 124265193 | Mpe_A0326b | - | 23S ribosomal RNA |
| 357384 | 357499 | + | 116 | 124265193 | Mpe_A0326c | - | 5S ribosomal RNA |
| 436925 | 437001 | - | 77 | 124265193 | Mpe_AR0033 | - | 06 Asp tRNA |
| 437048 | 437123 | - | 76 | 124265193 | Mpe_AR0034 | - | 04 Glu tRNA |
| 437182 | 437257 | - | 76 | 124265193 | Mpe_AR0035 | - | 02 Ala tRNA |
| 549475 | 549549 | - | 75 | 124265193 | Mpe_AR0036 | - | 13 Val tRNA |
| 707118 | 707191 | - | 74 | 124265193 | Mpe_AR0037 | - | 01 Gly tRNA |
| 747881 | 747974 | - | 94 | 124265193 | Mpe_AR0038 | - | 08 Ser tRNA |
| 999370 | 999460 | - | 91 | 124265193 | Mpe_AR0039 | - | 08 Ser tRNA |
| 1091801 | 1091876 | + | 76 | 124265193 | Mpe_AR0040 | - | 12 Thr tRNA |
| 1171543 | 1171632 | + | 90 | 124265193 | Mpe_AR0041 | - | 08 Ser tRNA |
| 1295213 | 1295288 | + | 76 | 124265193 | Mpe_AR0042 | - | 02 Ala tRNA |
| 1321553 | 1321629 | - | 77 | 124265193 | Mpe_AR0043 | - | 11 Arg tRNA |
| 1566338 | 1566414 | - | 77 | 124265193 | Mpe_AR0044 | - | 05 Gln tRNA |
| 1670868 | 1670944 | - | 77 | 124265193 | Mpe_AR0045 | - | 16 Met tRNA |
| 1764822 | 1764898 | - | 77 | 124265193 | Mpe_AR0046 | - | 16 Met tRNA |
| 1800382 | 1800457 | - | 76 | 124265193 | Mpe_AR0047 | - | 20 Trp tRNA |
| 1801719 | 1801793 | - | 75 | 124265193 | Mpe_AR0048 | - | 12 Thr tRNA |
| 1801895 | 1801968 | - | 74 | 124265193 | Mpe_AR0049 | - | 01 Gly tRNA |
| 1802065 | 1802150 | - | 86 | 124265193 | Mpe_AR0050 | - | 18 Tyr tRNA |
| 1887386 | 1887461 | - | 76 | 124265193 | Mpe_AR0051 | - | 11 Arg tRNA |
| 2477041 | 2477116 | + | 76 | 124265193 | Mpe_AR0052 | - | 17 Phe tRNA |
| 2531273 | 2531349 | + | 77 | 124265193 | Mpe_AR0053 | - | 14 Ile tRNA |
| 2531361 | 2531436 | + | 76 | 124265193 | Mpe_AR0054 | - | 02 Ala tRNA |
| 2726461 | 2726537 | - | 77 | 124265193 | Mpe_AR0055 | - | 03 Pro tRNA |
| 2760626 | 2760702 | - | 77 | 124265193 | Mpe_AR0056 | - | 16 Met tRNA |
| 3067431 | 3067506 | + | 76 | 124265193 | Mpe_AR0057 | - | 12 Thr tRNA |
| 3341502 | 3341576 | - | 75 | 124265193 | Mpe_AR0058 | - | 11 Arg tRNA |
| 3385845 | 3385929 | - | 85 | 124265193 | Mpe_AR0059 | - | 15 Leu tRNA |
| 3573437 | 3573523 | + | 87 | 124265193 | Mpe_AR0060 | - | 15 Leu tRNA |
| 3579618 | 3579693 | + | 76 | 124265193 | Mpe_AR0061 | - | 01 Gly tRNA |
| 3579779 | 3579852 | + | 74 | 124265193 | Mpe_AR0062 | - | 19 Cys tRNA |
| 3631806 | 3631881 | + | 76 | 124265193 | Mpe_AR0063 | - | 10 Lys tRNA |
| 3631920 | 3631995 | + | 76 | 124265193 | Mpe_AR0064 | - | 10 Lys tRNA |
| 3659536 | 3659612 | + | 77 | 124265193 | Mpe_AR0065 | - | 03 Pro tRNA |
| 3664884 | 3664960 | + | 77 | 124265193 | Mpe_AR0066 | - | 11 Arg tRNA |
| 3690121 | 3690205 | + | 85 | 124265193 | Mpe_AR0067 | - | 15 Leu tRNA |
| 3787121 | 3787196 | - | 76 | 124265193 | Mpe_AR0068 | - | 07 Asn tRNA |
| 3882870 | 3882946 | + | 77 | 124265193 | Mpe_AR0069 | - | 13 Val tRNA |

