Геном прокариот/Материалы:NC 009049
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_009049 3147721 bp DNA circular BCT 14-AUG-2007
DEFINITION Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence.
ACCESSION NC_009049
VERSION NC_009049.1 GI:126460778
KEYWORDS .
SOURCE Rhodobacter sphaeroides ATCC 17029
ORGANISM Rhodobacter sphaeroides ATCC 17029
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
Rhodobacteraceae; Rhodobacter.
REFERENCE 1 (bases 1 to 3147721)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M.,
Donohue,T.J. and Kaplan,S.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome1 of Rhodobacter sphaeroides ATCC
17029
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3147721)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3147721)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M.,
Donohue,T.J. and Kaplan,S.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-FEB-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000577.
URL -- http://www.jgi.doe.gov
http://www.rhodobacter.org
JGI Project ID: 4000715
Source DNA and bacteria available from Chris Mackenzie
(Ronald.C.Mackenzie@uth.tmc.edu) and Samuel Kaplan
(Samuel.Kaplan@uth.tmc.edu)
Contacts: Samuel Kaplan (samuel.kaplan@uth.tmc.edu)
Ronald C. Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 75917 | 75991 | - | 75 | 126460778 | Rsph17029_R0001 | - | 13 Val tRNA |
| 87772 | 89231 | + | 1460 | 126460778 | Rsph17029_R0002 | - | 16S ribosomal RNA |
| 89452 | 89528 | + | 77 | 126460778 | Rsph17029_R0003 | - | 14 Ile tRNA |
| 89576 | 89651 | + | 76 | 126460778 | Rsph17029_R0004 | - | 02 Ala tRNA |
| 89899 | 92816 | + | 2918 | 126460778 | Rsph17029_R0005 | - | 23S ribosomal RNA |
| 92914 | 93031 | + | 118 | 126460778 | Rsph17029_R0006 | - | 5S ribosomal RNA |
| 93075 | 93151 | + | 77 | 126460778 | Rsph17029_R0007 | - | 16 Met tRNA |
| 172949 | 173024 | - | 76 | 126460778 | Rsph17029_R0008 | - | 12 Thr tRNA |
| 295859 | 295948 | - | 90 | 126460778 | Rsph17029_R0009 | - | 08 Ser tRNA |
| 314101 | 314176 | - | 76 | 126460778 | Rsph17029_R0010 | - | 11 Arg tRNA |
| 348793 | 348868 | + | 76 | 126460778 | Rsph17029_R0011 | - | 20 Trp tRNA |
| 367470 | 367545 | + | 76 | 126460778 | Rsph17029_R0012 | - | 20 Trp tRNA |
| 557446 | 557532 | + | 87 | 126460778 | Rsph17029_R0013 | - | 15 Leu tRNA |
| 590248 | 590331 | + | 84 | 126460778 | Rsph17029_R0014 | - | 15 Leu tRNA |
| 681946 | 682021 | - | 76 | 126460778 | Rsph17029_R0015 | - | 16 Met tRNA |
| 758917 | 758993 | - | 77 | 126460778 | Rsph17029_R0016 | - | 11 Arg tRNA |
| 767347 | 767421 | - | 75 | 126460778 | Rsph17029_R0017 | - | 01 Gly tRNA |
| 850653 | 850727 | + | 75 | 126460778 | Rsph17029_R0018 | - | 04 Glu tRNA |
| 974403 | 974750 | + | 348 | 126460778 | Rsph17029_R0019 | - | |
| 1055811 | 1055887 | + | 77 | 126460778 | Rsph17029_R0020 | - | 03 Pro tRNA |
| 1313806 | 1313883 | - | 78 | 126460778 | Rsph17029_R0021 | - | 03 Pro tRNA |
| 1461693 | 1461766 | - | 74 | 126460778 | Rsph17029_R0022 | - | 01 Gly tRNA |
| 1526103 | 1526177 | + | 75 | 126460778 | Rsph17029_R0023 | - | 05 Gln tRNA |
| 1555152 | 1555226 | - | 75 | 126460778 | Rsph17029_R0024 | - | 13 Val tRNA |
| 1655806 | 1655889 | - | 84 | 126460778 | Rsph17029_R0025 | - | 15 Leu tRNA |
| 1725419 | 1725495 | - | 77 | 126460778 | Rsph17029_R0026 | - | 06 Asp tRNA |
| 1725531 | 1725607 | - | 77 | 126460778 | Rsph17029_R0027 | - | 06 Asp tRNA |
| 1827841 | 1827912 | + | 72 | 126460778 | Rsph17029_R0028 | - | 12 Thr tRNA |
| 1863644 | 1863718 | + | 75 | 126460778 | Rsph17029_R0029 | - | 01 Gly tRNA |
| 1869177 | 1869250 | - | 74 | 126460778 | Rsph17029_R0030 | - | 19 Cys tRNA |
| 1873018 | 1873102 | - | 85 | 126460778 | Rsph17029_R0031 | - | 15 Leu tRNA |
| 1936729 | 1936803 | + | 75 | 126460778 | Rsph17029_R0032 | - | 07 Asn tRNA |
| 1972534 | 1972635 | + | 102 | 126460778 | Rsph17029_R0033 | - | |
| 1974753 | 1974842 | - | 90 | 126460778 | Rsph17029_R0034 | - | 08 Ser tRNA |
| 2184212 | 2184286 | + | 75 | 126460778 | Rsph17029_R0035 | - | 04 Glu tRNA |
| 2389524 | 2389600 | + | 77 | 126460778 | Rsph17029_R0036 | - | 11 Arg tRNA |
| 2408791 | 2408866 | - | 76 | 126460778 | Rsph17029_R0037 | - | 17 Phe tRNA |
| 2417575 | 2417649 | + | 75 | 126460778 | Rsph17029_R0038 | - | 12 Thr tRNA |
| 2502811 | 2502911 | + | 101 | 126460778 | Rsph17029_R0039 | - | SRP RNA; RNA component of signal recognition particle |
| 2542432 | 2542508 | + | 77 | 126460778 | Rsph17029_R0040 | - | 09 His tRNA |
| 2655036 | 2655112 | - | 77 | 126460778 | Rsph17029_R0041 | - | 03 Pro tRNA |
| 2734589 | 2734663 | + | 75 | 126460778 | Rsph17029_R0042 | - | 10 Lys tRNA |
| 2788869 | 2788944 | + | 76 | 126460778 | Rsph17029_R0043 | - | 02 Ala tRNA |
| 2860832 | 2860908 | - | 77 | 126460778 | Rsph17029_R0044 | - | 11 Arg tRNA |
| 2963234 | 2963318 | + | 85 | 126460778 | Rsph17029_R0045 | - | 15 Leu tRNA |

