Геном прокариот/Материалы:NC 009337
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LOCUS NC_009337 1966858 bp DNA circular BCT 14-AUG-2007
DEFINITION Prosthecochloris vibrioformis DSM 265, complete genome.
ACCESSION NC_009337
VERSION NC_009337.1 GI:145218822
KEYWORDS .
SOURCE Prosthecochloris vibrioformis DSM 265
ORGANISM Prosthecochloris vibrioformis DSM 265
Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae;
Chlorobium/Pelodictyon group; Chlorobium.
REFERENCE 1 (bases 1 to 1966858)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J.,
Schuster,S.C., Bryant,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Prosthecochloris vibrioformis DSM 265
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1966858)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-APR-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1966858)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J.,
Schuster,S.C., Bryant,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000607.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634473
Source DNA and bacteria available from Donald A. Bryant
(dab14@psu.edu)
Contacts: Donald A. Bryant (dab14@psu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by Donald A. Bryant
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Additional Notes: By phylogeny it does not cluster with the type
species of Prosthecochloris (P. aestuarii DSM 271) and it's closest
relative is Chlorobium phaeovibrioides DSM 269. Also see the
Comments and References of the NCBI Taxomy Browser for
Prosthecochloris vibrioformis DSM 265.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 30724 | 30799 | - | 76 | 145218822 | Cvib_R0001 | - | 12 Thr tRNA |
| 155961 | 156037 | + | 77 | 145218822 | Cvib_R0002 | - | 13 Val tRNA |
| 191773 | 193279 | + | 1507 | 145218822 | Cvib_R0003 | - | 16S ribosomal RNA |
| 193441 | 193517 | + | 77 | 145218822 | Cvib_R0004 | - | 14 Ile tRNA |
| 193562 | 193637 | + | 76 | 145218822 | Cvib_R0005 | - | 02 Ala tRNA |
| 193777 | 196682 | + | 2906 | 145218822 | Cvib_R0006 | - | 23S ribosomal RNA |
| 196798 | 196917 | + | 120 | 145218822 | Cvib_R0007 | - | 5S ribosomal RNA |
| 221833 | 221907 | - | 75 | 145218822 | Cvib_R0008 | - | 07 Asn tRNA |
| 265126 | 265198 | + | 73 | 145218822 | Cvib_R0009 | - | 01 Gly tRNA |
| 411414 | 411488 | - | 75 | 145218822 | Cvib_R0010 | - | 06 Asp tRNA |
| 558852 | 558924 | - | 73 | 145218822 | Cvib_R0011 | - | 02 Ala tRNA |
| 653522 | 653595 | + | 74 | 145218822 | Cvib_R0012 | - | 13 Val tRNA |
| 671222 | 671308 | - | 87 | 145218822 | Cvib_R0013 | - | 08 Ser tRNA |
| 672620 | 672695 | - | 76 | 145218822 | Cvib_R0014 | - | 01 Gly tRNA |
| 801554 | 801901 | - | 348 | 145218822 | Cvib_R0015 | - | RNaseP RNA |
| 802967 | 803048 | - | 82 | 145218822 | Cvib_R0016 | - | 15 Leu tRNA |
| 840408 | 840484 | - | 77 | 145218822 | Cvib_R0017 | - | 13 Val tRNA |
| 869339 | 869414 | + | 76 | 145218822 | Cvib_R0018 | - | 16 Met tRNA |
| 1045309 | 1045382 | + | 74 | 145218822 | Cvib_R0019 | - | 19 Cys tRNA |
| 1162288 | 1162363 | - | 76 | 145218822 | Cvib_R0020 | - | 03 Pro tRNA |
| 1162376 | 1162448 | - | 73 | 145218822 | Cvib_R0021 | - | 11 Arg tRNA |
| 1182416 | 1182492 | + | 77 | 145218822 | Cvib_R0022 | - | 16 Met tRNA |
| 1182496 | 1182571 | + | 76 | 145218822 | Cvib_R0023 | - | 01 Gly tRNA |
| 1189890 | 1189979 | - | 90 | 145218822 | Cvib_R0024 | - | 08 Ser tRNA |
| 1189991 | 1190073 | - | 83 | 145218822 | Cvib_R0025 | - | 08 Ser tRNA |
| 1190335 | 1190424 | - | 90 | 145218822 | Cvib_R0026 | - | 08 Ser tRNA |
| 1238940 | 1239021 | + | 82 | 145218822 | Cvib_R0027 | - | 15 Leu tRNA |
| 1239038 | 1239124 | + | 87 | 145218822 | Cvib_R0028 | - | 15 Leu tRNA |
| 1250474 | 1250549 | - | 76 | 145218822 | Cvib_R0029 | - | 10 Lys tRNA |
| 1256678 | 1256749 | - | 72 | 145218822 | Cvib_R0030 | - | 04 Glu tRNA |
| 1256758 | 1256833 | - | 76 | 145218822 | Cvib_R0031 | - | 09 His tRNA |
| 1256864 | 1256939 | - | 76 | 145218822 | Cvib_R0032 | - | 11 Arg tRNA |
| 1256964 | 1257036 | - | 73 | 145218822 | Cvib_R0033 | - | 03 Pro tRNA |
| 1267599 | 1267673 | + | 75 | 145218822 | Cvib_R0034 | - | 05 Gln tRNA |
| 1286491 | 1286889 | - | 399 | 145218822 | Cvib_R0035 | - | tmRNA |
| 1365260 | 1365333 | + | 74 | 145218822 | Cvib_R0036 | - | 16 Met tRNA |
| 1365370 | 1365443 | + | 74 | 145218822 | Cvib_R0037 | - | 04 Glu tRNA |
| 1365491 | 1365567 | + | 77 | 145218822 | Cvib_R0038 | - | 11 Arg tRNA |
| 1365578 | 1365649 | + | 72 | 145218822 | Cvib_R0039 | - | 05 Gln tRNA |
| 1674295 | 1674367 | - | 73 | 145218822 | Cvib_R0040 | - | 17 Phe tRNA |
| 1709556 | 1709637 | - | 82 | 145218822 | Cvib_R0041 | - | 15 Leu tRNA |
| 1709674 | 1709746 | - | 73 | 145218822 | Cvib_R0042 | - | 10 Lys tRNA |
| 1753991 | 1754079 | + | 89 | 145218822 | Cvib_R0043 | - | 15 Leu tRNA |
| 1762444 | 1762517 | - | 74 | 145218822 | Cvib_R0044 | - | 03 Pro tRNA |
| 1795284 | 1795356 | - | 73 | 145218822 | Cvib_R0045 | - | 20 Trp tRNA |
| 1795385 | 1795457 | - | 73 | 145218822 | Cvib_R0046 | - | 12 Thr tRNA |
| 1795482 | 1795564 | - | 83 | 145218822 | Cvib_R0047 | - | 18 Tyr tRNA |
| 1795578 | 1795650 | - | 73 | 145218822 | Cvib_R0048 | - | 12 Thr tRNA |
| 1809396 | 1809471 | - | 76 | 145218822 | Cvib_R0049 | - | 11 Arg tRNA |
| 1923540 | 1923643 | - | 104 | 145218822 | Cvib_R0050 | - | SRP RNA; RNA component of signal recognition particle |
| 1933562 | 1933637 | - | 76 | 145218822 | Cvib_R0051 | - | 02 Ala tRNA |

