Геном прокариот/Материалы:NC 009338
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LOCUS NC_009338 5619607 bp DNA circular BCT 17-APR-2007
DEFINITION Mycobacterium gilvum PYR-GCK, complete genome.
ACCESSION NC_009338
VERSION NC_009338.1 GI:145220606
KEYWORDS .
SOURCE Mycobacterium gilvum PYR-GCK
ORGANISM Mycobacterium gilvum PYR-GCK
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
Corynebacterineae; Mycobacteriaceae; Mycobacterium.
REFERENCE 1 (bases 1 to 5619607)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Mycobacterium gilvum PYR-GCK
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5619607)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-APR-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5619607)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (09-APR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000656.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000377
Source DNA and bacteria available from Charles Miller
(cdmiller@biology.usu.edu)
Contacts: Charles Miller (cdmiller@biology.usu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 288923 | 288996 | + | 74 | 145220606 | Mflv_R0001 | - | 01 Gly tRNA |
| 831384 | 831466 | - | 83 | 145220606 | Mflv_R0002 | - | 15 Leu tRNA |
| 846632 | 846707 | - | 76 | 145220606 | Mflv_R0003 | - | 02 Ala tRNA |
| 846843 | 846916 | - | 74 | 145220606 | Mflv_R0004 | - | 14 Ile tRNA |
| 1248988 | 1249077 | + | 90 | 145220606 | Mflv_R0005 | - | 08 Ser tRNA |
| 1252964 | 1253052 | + | 89 | 145220606 | Mflv_R0006 | - | 08 Ser tRNA |
| 1253100 | 1253172 | + | 73 | 145220606 | Mflv_R0007 | - | 11 Arg tRNA |
| 1271357 | 1271447 | + | 91 | 145220606 | Mflv_R0008 | - | 08 Ser tRNA |
| 1332484 | 1332569 | - | 86 | 145220606 | Mflv_R0009 | - | 08 Ser tRNA |
| 1332666 | 1332758 | + | 93 | 145220606 | Mflv_R0010 | - | SRP RNA; RNA component of signal recognition particle |
| 1417917 | 1417990 | - | 74 | 145220606 | Mflv_R0011 | - | 03 Pro tRNA |
| 1455669 | 1455744 | + | 76 | 145220606 | Mflv_R0012 | - | 12 Thr tRNA |
| 1652551 | 1652625 | - | 75 | 145220606 | Mflv_R0013 | - | 12 Thr tRNA |
| 1739588 | 1739663 | - | 76 | 145220606 | Mflv_R0014 | - | 10 Lys tRNA |
| 1739791 | 1739863 | + | 73 | 145220606 | Mflv_R0015 | - | 04 Glu tRNA |
| 1739903 | 1739979 | + | 77 | 145220606 | Mflv_R0016 | - | 06 Asp tRNA |
| 1740021 | 1740094 | + | 74 | 145220606 | Mflv_R0017 | - | 17 Phe tRNA |
| 1884092 | 1884164 | - | 73 | 145220606 | Mflv_R0018 | - | 11 Arg tRNA |
| 1980034 | 1980109 | + | 76 | 145220606 | Mflv_R0019 | - | 02 Ala tRNA |
| 2022565 | 2022636 | - | 72 | 145220606 | Mflv_R0020 | - | 05 Gln tRNA |
| 2054754 | 2054830 | + | 77 | 145220606 | Mflv_R0021 | - | 15 Leu tRNA |
| 2386934 | 2387006 | - | 73 | 145220606 | Mflv_R0022 | - | 11 Arg tRNA |
| 2414610 | 2416122 | + | 1513 | 145220606 | Mflv_R0023 | - | 16S ribosomal RNA |
| 2416551 | 2419710 | + | 3160 | 145220606 | Mflv_R0024 | - | 23S ribosomal RNA |
| 2419793 | 2419904 | + | 112 | 145220606 | Mflv_R0025 | - | 5S ribosomal RNA |
| 2463953 | 2464037 | + | 85 | 145220606 | Mflv_R0026 | - | 15 Leu tRNA |
| 2652379 | 2652454 | - | 76 | 145220606 | Mflv_R0027 | - | 10 Lys tRNA |
| 2653892 | 2653967 | - | 76 | 145220606 | Mflv_R0028 | - | 09 His tRNA |
| 2674083 | 2674155 | - | 73 | 145220606 | Mflv_R0029 | - | 11 Arg tRNA |
| 2704089 | 2704162 | - | 74 | 145220606 | Mflv_R0030 | - | 01 Gly tRNA |
| 2704297 | 2704373 | + | 77 | 145220606 | Mflv_R0031 | - | 03 Pro tRNA |
| 2866420 | 2866495 | + | 76 | 145220606 | Mflv_R0032 | - | 07 Asn tRNA |
| 2878324 | 2878397 | + | 74 | 145220606 | Mflv_R0033 | - | 16 Met tRNA |
| 2932311 | 2932385 | + | 75 | 145220606 | Mflv_R0034 | - | 13 Val tRNA |
| 3066122 | 3066475 | + | 354 | 145220606 | Mflv_R0035 | - | RNase P RNA |
| 3217675 | 3217760 | - | 86 | 145220606 | Mflv_R0036 | - | 15 Leu tRNA |
| 3717086 | 3717159 | - | 74 | 145220606 | Mflv_R0037 | - | 03 Pro tRNA |
| 3739301 | 3739412 | - | 112 | 145220606 | Mflv_R0038 | - | 5S ribosomal RNA |
| 3739495 | 3742653 | - | 3159 | 145220606 | Mflv_R0039 | - | 23S ribosomal RNA |
| 3743082 | 3744594 | - | 1513 | 145220606 | Mflv_R0040 | - | 16S ribosomal RNA |
| 3790949 | 3791019 | - | 71 | 145220606 | Mflv_R0041 | - | Xaa tRNA |
| 3813229 | 3813305 | + | 77 | 145220606 | Mflv_R0042 | - | 15 Leu tRNA |
| 4154724 | 4154795 | - | 72 | 145220606 | Mflv_R0043 | - | 13 Val tRNA |
| 4155427 | 4155502 | + | 76 | 145220606 | Mflv_R0044 | - | 01 Gly tRNA |
| 4155527 | 4155600 | + | 74 | 145220606 | Mflv_R0045 | - | 19 Cys tRNA |
| 4155613 | 4155687 | + | 75 | 145220606 | Mflv_R0046 | - | 13 Val tRNA |
| 4487808 | 4487883 | - | 76 | 145220606 | Mflv_R0047 | - | 04 Glu tRNA |
| 4487946 | 4488020 | - | 75 | 145220606 | Mflv_R0048 | - | 05 Gln tRNA |
| 4684643 | 4684718 | - | 76 | 145220606 | Mflv_R0049 | - | 02 Ala tRNA |
| 4729388 | 4729753 | + | 366 | 145220606 | Mflv_R0050 | - | tmRNA |
| 4948427 | 4948503 | - | 77 | 145220606 | Mflv_R0051 | - | 16 Met tRNA |
| 5441926 | 5441998 | - | 73 | 145220606 | Mflv_R0052 | - | 20 Trp tRNA |
| 5443890 | 5443963 | - | 74 | 145220606 | Mflv_R0053 | - | 16 Met tRNA |
| 5444013 | 5444085 | - | 73 | 145220606 | Mflv_R0054 | - | 12 Thr tRNA |
| 5596430 | 5596515 | - | 86 | 145220606 | Mflv_R0055 | - | 18 Tyr tRNA |

