Геном прокариот/Материалы:NC 009428

	Базовый уровень статей Выделить только проверенную информацию
	Создать черновик

   LOCUS       NC_009428            3217726 bp    DNA     circular BCT 21-JUN-2007
   DEFINITION  Rhodobacter sphaeroides ATCC 17025, complete genome.
   ACCESSION   NC_009428
   VERSION     NC_009428.1  GI:146276058
   KEYWORDS    .
   SOURCE      Rhodobacter sphaeroides ATCC 17025
     ORGANISM  Rhodobacter sphaeroides ATCC 17025
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Rhodobacter.
   REFERENCE   1  (bases 1 to 3217726)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P.,
               Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Rhodobacter sphaeroides ATCC
               17025
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3217726)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3217726)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (10-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000661.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000699
               Source DNA and bacteria available from Samuel Kaplan
               (Samuel.Kaplan@uth.tmc.edu)
               Contacts: Paul Richardson (Microbes@cuba.jgi-psf.org)
                         Samuel Kaplan (Samuel.Kaplan@uth.tmc.edu)
                         Ronald C. Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               Additional Notes: This genome has an unresolved number of a 45kb
               repeat. We estimate that there are 2 copies of this repeat based on
               the large coverage by draft reads and multiple links of 35 and 6 kb
               libraries from unique to repeat.  We don't have subclones that span
               this area from unique to unique. We could not produce long range
               PCR for this area. It is possible that this genome may be
               rearranged because of this 45 kb repeat.
               COMPLETENESS: full length.