Геном прокариот/Материалы:NC 009437
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LOCUS NC_009437 2970275 bp DNA circular BCT 14-AUG-2007
DEFINITION Caldicellulosiruptor saccharolyticus DSM 8903, complete genome.
ACCESSION NC_009437
VERSION NC_009437.1 GI:146295085
KEYWORDS .
SOURCE Caldicellulosiruptor saccharolyticus DSM 8903
ORGANISM Caldicellulosiruptor saccharolyticus DSM 8903
Bacteria; Firmicutes; Clostridia; Clostridiales;
Syntrophomonadaceae; Caldicellulosiruptor.
REFERENCE 1 (bases 1 to 2970275)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Lykidis,A., van de Werken,H.J.G.,
Verhaart,M.R.A., VanFossen,A.L., Lewis,D.L., Nichols,J.D.,
Goorissen,H.P., van Niel,E.W.J., Stams,F.J.M., Willquist,K.U.,
Ward,D.E., van der Oost,J., Kelly,R.M., Kengen,S.M.W. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Genome sequence of the thermophilic hydrogen-producing bacterium
Caldicellulosiruptor saccharolyticus DSM 8903
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2970275)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-MAY-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2970275)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-APR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000679.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000186
Source DNA available from Robert M Kelly (rmkelly@eos.ncsu.edu)
Bacteria available from DSMZ: DSM 8903
Contacts: Robert M Kelly (rmkelly@eos.ncsu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Additinal note: There are an unresolved number of A's at location
913,462.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 284251 | 285806 | + | 1556 | 146295085 | Csac_R0001 | - | 16S ribosomal RNA |
| 285859 | 285934 | + | 76 | 146295085 | Csac_R0002 | - | 02 Ala tRNA |
| 285944 | 286020 | + | 77 | 146295085 | Csac_R0003 | - | 14 Ile tRNA |
| 286093 | 289056 | + | 2964 | 146295085 | Csac_R0004 | - | 23S ribosomal RNA |
| 289124 | 289239 | + | 116 | 146295085 | Csac_R0005 | - | 5S ribosomal RNA |
| 330732 | 330824 | - | 93 | 146295085 | Csac_R0006 | - | 08 Ser tRNA |
| 486454 | 488011 | + | 1558 | 146295085 | Csac_R0007 | - | 16S ribosomal RNA |
| 488147 | 491112 | + | 2966 | 146295085 | Csac_R0008 | - | 23S ribosomal RNA |
| 491189 | 491304 | + | 116 | 146295085 | Csac_R0009 | - | 5S ribosomal RNA |
| 517256 | 517343 | + | 88 | 146295085 | Csac_R0010 | - | 15 Leu tRNA |
| 605388 | 605464 | + | 77 | 146295085 | Csac_R0011 | - | 03 Pro tRNA |
| 605560 | 605644 | + | 85 | 146295085 | Csac_R0012 | - | 18 Tyr tRNA |
| 605662 | 605737 | + | 76 | 146295085 | Csac_R0013 | - | 12 Thr tRNA |
| 605764 | 605839 | + | 76 | 146295085 | Csac_R0014 | - | 10 Lys tRNA |
| 605848 | 605924 | + | 77 | 146295085 | Csac_R0015 | - | 11 Arg tRNA |
| 850051 | 850137 | + | 87 | 146295085 | Csac_R0016 | - | SRP RNA; RNA component of signal recognition particle |
| 861334 | 861425 | + | 92 | 146295085 | Csac_R0017 | - | 08 Ser tRNA |
| 1013590 | 1013667 | - | 78 | 146295085 | Csac_R0018 | - | 03 Pro tRNA |
| 1020428 | 1020503 | + | 76 | 146295085 | Csac_R0019 | - | 13 Val tRNA |
| 1020512 | 1020588 | + | 77 | 146295085 | Csac_R0020 | - | 06 Asp tRNA |
| 1020600 | 1020675 | + | 76 | 146295085 | Csac_R0021 | - | 17 Phe tRNA |
| 1020694 | 1020769 | + | 76 | 146295085 | Csac_R0022 | - | 01 Gly tRNA |
| 1020792 | 1020866 | + | 75 | 146295085 | Csac_R0023 | - | 19 Cys tRNA |
| 1143722 | 1143797 | - | 76 | 146295085 | Csac_R0024 | - | 11 Arg tRNA |
| 1244819 | 1245183 | - | 365 | 146295085 | Csac_R0025 | - | tmRNA |
| 1389177 | 1389269 | - | 93 | 146295085 | Csac_R0026 | - | 08 Ser tRNA |
| 1400474 | 1400550 | + | 77 | 146295085 | Csac_R0027 | - | 09 His tRNA |
| 1400565 | 1400640 | + | 76 | 146295085 | Csac_R0028 | - | 05 Gln tRNA |
| 1405841 | 1405916 | + | 76 | 146295085 | Csac_R0029 | - | 10 Lys tRNA |
| 1617865 | 1617941 | - | 77 | 146295085 | Csac_R0030 | - | 11 Arg tRNA |
| 1813559 | 1813632 | + | 74 | 146295085 | Csac_R0031 | - | 01 Gly tRNA |
| 1891247 | 1891325 | - | 79 | 146295085 | Csac_R0032 | - | 03 Pro tRNA |
| 1912700 | 1912776 | - | 77 | 146295085 | Csac_R0033 | - | 13 Val tRNA |
| 2241920 | 2241994 | + | 75 | 146295085 | Csac_R0034 | - | 12 Thr tRNA |
| 2263873 | 2264171 | - | 299 | 146295085 | Csac_R0035 | - | bacterial RNase P |
| 2318657 | 2318743 | - | 87 | 146295085 | Csac_R0036 | - | 15 Leu tRNA |
| 2323865 | 2323939 | - | 75 | 146295085 | Csac_R0037 | - | 04 Glu tRNA |
| 2323969 | 2324045 | - | 77 | 146295085 | Csac_R0038 | - | 16 Met tRNA |
| 2324066 | 2324141 | - | 76 | 146295085 | Csac_R0039 | - | 16 Met tRNA |
| 2324147 | 2324236 | - | 90 | 146295085 | Csac_R0040 | - | 15 Leu tRNA |
| 2324293 | 2324377 | - | 85 | 146295085 | Csac_R0041 | - | 15 Leu tRNA |
| 2350660 | 2350736 | - | 77 | 146295085 | Csac_R0042 | - | 12 Thr tRNA |
| 2350786 | 2350859 | - | 74 | 146295085 | Csac_R0043 | - | 01 Gly tRNA |
| 2353809 | 2353899 | - | 91 | 146295085 | Csac_R0044 | - | 08 Ser tRNA |
| 2375147 | 2375262 | - | 116 | 146295085 | Csac_R0045 | - | 5S ribosomal RNA |
| 2375335 | 2378297 | - | 2963 | 146295085 | Csac_R0046 | - | 23S ribosomal RNA |
| 2378371 | 2378447 | - | 77 | 146295085 | Csac_R0047 | - | 14 Ile tRNA |
| 2378454 | 2378529 | - | 76 | 146295085 | Csac_R0048 | - | 02 Ala tRNA |
| 2378593 | 2380149 | - | 1557 | 146295085 | Csac_R0049 | - | 16S ribosomal RNA |
| 2390093 | 2390168 | - | 76 | 146295085 | Csac_R0050 | - | 04 Glu tRNA |
| 2390173 | 2390246 | - | 74 | 146295085 | Csac_R0051 | - | 05 Gln tRNA |
| 2742575 | 2742649 | - | 75 | 146295085 | Csac_R0052 | - | 04 Glu tRNA |
| 2742673 | 2742748 | - | 76 | 146295085 | Csac_R0053 | - | 10 Lys tRNA |
| 2876559 | 2876634 | - | 76 | 146295085 | Csac_R0054 | - | 16 Met tRNA |
| 2876644 | 2876718 | - | 75 | 146295085 | Csac_R0055 | - | 07 Asn tRNA |
| 2884397 | 2884484 | + | 88 | 146295085 | Csac_R0056 | - | 15 Leu tRNA |
| 2884554 | 2884630 | + | 77 | 146295085 | Csac_R0057 | - | 11 Arg tRNA |
| 2938708 | 2938783 | + | 76 | 146295085 | Csac_R0058 | - | 20 Trp tRNA |

