Геном прокариот/Материалы:NC 009441
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LOCUS NC_009441 6096872 bp DNA circular BCT 14-AUG-2007
DEFINITION Flavobacterium johnsoniae UW101, complete genome.
ACCESSION NC_009441
VERSION NC_009441.1 GI:146297766
KEYWORDS .
SOURCE Flavobacterium johnsoniae UW101
ORGANISM Flavobacterium johnsoniae UW101
Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales;
Flavobacteriaceae; Flavobacterium.
REFERENCE 1 (bases 1 to 6096872)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Xie,G., McBride,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Flavobacterium johnsoniae UW101
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6096872)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-MAY-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6096872)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Xie,G., McBride,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (24-APR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000685.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000268
Source DNA available from Mark McBride (mcbride@uwm.edu)
Bacteria available from ATCC: ATCC 17061
Contacts: Mark McBride (mcbride@uwm.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 24130 | 24249 | - | 120 | 146297766 | Fjoh_R0001 | - | 5S ribosomal RNA |
| 24406 | 27279 | - | 2874 | 146297766 | Fjoh_R0002 | - | 23S ribosomal RNA |
| 27468 | 27544 | - | 77 | 146297766 | Fjoh_R0003 | - | 02 Ala tRNA |
| 27685 | 27758 | - | 74 | 146297766 | Fjoh_R0004 | - | 14 Ile tRNA |
| 27883 | 29401 | - | 1519 | 146297766 | Fjoh_R0005 | - | 16S ribosomal RNA |
| 59185 | 59260 | + | 76 | 146297766 | Fjoh_R0006 | - | 10 Lys tRNA |
| 59298 | 59373 | + | 76 | 146297766 | Fjoh_R0007 | - | 10 Lys tRNA |
| 59415 | 59497 | + | 83 | 146297766 | Fjoh_R0008 | - | 15 Leu tRNA |
| 60334 | 60409 | + | 76 | 146297766 | Fjoh_R0009 | - | 10 Lys tRNA |
| 149554 | 149630 | + | 77 | 146297766 | Fjoh_R0010 | - | 16 Met tRNA |
| 210753 | 210830 | + | 78 | 146297766 | Fjoh_R0011 | - | 03 Pro tRNA |
| 285239 | 285315 | - | 77 | 146297766 | Fjoh_R0012 | - | 12 Thr tRNA |
| 285421 | 285497 | - | 77 | 146297766 | Fjoh_R0013 | - | 12 Thr tRNA |
| 479336 | 479413 | + | 78 | 146297766 | Fjoh_R0014 | - | 13 Val tRNA |
| 500470 | 500589 | - | 120 | 146297766 | Fjoh_R0015 | - | 5S ribosomal RNA |
| 500746 | 503619 | - | 2874 | 146297766 | Fjoh_R0016 | - | 23S ribosomal RNA |
| 503808 | 503884 | - | 77 | 146297766 | Fjoh_R0017 | - | 02 Ala tRNA |
| 504025 | 504098 | - | 74 | 146297766 | Fjoh_R0018 | - | 14 Ile tRNA |
| 504223 | 505741 | - | 1519 | 146297766 | Fjoh_R0019 | - | 16S ribosomal RNA |
| 636553 | 636629 | + | 77 | 146297766 | Fjoh_R0020 | - | 02 Ala tRNA |
| 717349 | 717422 | - | 74 | 146297766 | Fjoh_R0021 | - | 16 Met tRNA |
| 1158187 | 1158260 | + | 74 | 146297766 | Fjoh_R0022 | - | Xaa tRNA |
| 1273954 | 1274033 | - | 80 | 146297766 | Fjoh_R0023 | - | 15 Leu tRNA |
| 1309065 | 1309138 | - | 74 | 146297766 | Fjoh_R0024 | - | 07 Asn tRNA |
| 1309174 | 1309250 | - | 77 | 146297766 | Fjoh_R0025 | - | 07 Asn tRNA |
| 1466584 | 1466673 | + | 90 | 146297766 | Fjoh_R0026 | - | 08 Ser tRNA |
| 1544677 | 1544753 | + | 77 | 146297766 | Fjoh_R0027 | - | 06 Asp tRNA |
| 1545349 | 1545425 | + | 77 | 146297766 | Fjoh_R0028 | - | 06 Asp tRNA |
| 1555298 | 1555382 | - | 85 | 146297766 | Fjoh_R0029 | - | 15 Leu tRNA |
| 1617260 | 1617335 | - | 76 | 146297766 | Fjoh_R0030 | - | 17 Phe tRNA |
| 1877676 | 1877746 | + | 71 | 146297766 | Fjoh_R0031 | - | 05 Gln tRNA |
| 1877856 | 1877926 | + | 71 | 146297766 | Fjoh_R0032 | - | 05 Gln tRNA |
| 1997996 | 1998071 | + | 76 | 146297766 | Fjoh_R0033 | - | 01 Gly tRNA |
| 1998083 | 1998171 | + | 89 | 146297766 | Fjoh_R0034 | - | 15 Leu tRNA |
| 2049396 | 2049471 | + | 76 | 146297766 | Fjoh_R0035 | - | 01 Gly tRNA |
| 2049565 | 2049637 | + | 73 | 146297766 | Fjoh_R0036 | - | 01 Gly tRNA |
| 2099953 | 2100026 | + | 74 | 146297766 | Fjoh_R0037 | - | 11 Arg tRNA |
| 2152539 | 2152614 | - | 76 | 146297766 | Fjoh_R0038 | - | 16 Met tRNA |
| 2161302 | 2161376 | - | 75 | 146297766 | Fjoh_R0039 | - | 04 Glu tRNA |
| 2163372 | 2163447 | - | 76 | 146297766 | Fjoh_R0040 | - | 16 Met tRNA |
| 2238456 | 2238532 | + | 77 | 146297766 | Fjoh_R0041 | - | 12 Thr tRNA |
| 2238589 | 2238672 | + | 84 | 146297766 | Fjoh_R0042 | - | 18 Tyr tRNA |
| 2238761 | 2238835 | + | 75 | 146297766 | Fjoh_R0043 | - | 12 Thr tRNA |
| 2240138 | 2240211 | + | 74 | 146297766 | Fjoh_R0044 | - | 20 Trp tRNA |
| 2304220 | 2305738 | + | 1519 | 146297766 | Fjoh_R0045 | - | 16S ribosomal RNA |
| 2305862 | 2305935 | + | 74 | 146297766 | Fjoh_R0046 | - | 14 Ile tRNA |
| 2306076 | 2306152 | + | 77 | 146297766 | Fjoh_R0047 | - | 02 Ala tRNA |
| 2306342 | 2309215 | + | 2874 | 146297766 | Fjoh_R0048 | - | 23S ribosomal RNA |
| 2309372 | 2309491 | + | 120 | 146297766 | Fjoh_R0049 | - | 5S ribosomal RNA |
| 2543534 | 2543621 | - | 88 | 146297766 | Fjoh_R0050 | - | 08 Ser tRNA |
| 2544889 | 2546407 | + | 1519 | 146297766 | Fjoh_R0051 | - | 16S ribosomal RNA |
| 2546531 | 2546604 | + | 74 | 146297766 | Fjoh_R0052 | - | 14 Ile tRNA |
| 2546745 | 2546821 | + | 77 | 146297766 | Fjoh_R0053 | - | 02 Ala tRNA |
| 2547011 | 2549884 | + | 2874 | 146297766 | Fjoh_R0054 | - | 23S ribosomal RNA |
| 2550041 | 2550160 | + | 120 | 146297766 | Fjoh_R0055 | - | 5S ribosomal RNA |
| 2551831 | 2551918 | - | 88 | 146297766 | Fjoh_R0056 | - | 08 Ser tRNA |
| 3263822 | 3265340 | + | 1519 | 146297766 | Fjoh_R0057 | - | 16S ribosomal RNA |
| 3265464 | 3265537 | + | 74 | 146297766 | Fjoh_R0058 | - | 14 Ile tRNA |
| 3265678 | 3265754 | + | 77 | 146297766 | Fjoh_R0059 | - | 02 Ala tRNA |
| 3265944 | 3268817 | + | 2874 | 146297766 | Fjoh_R0060 | - | 23S ribosomal RNA |
| 3268974 | 3269093 | + | 120 | 146297766 | Fjoh_R0061 | - | 5S ribosomal RNA |
| 3269156 | 3269228 | + | 73 | 146297766 | Fjoh_R0062 | - | 17 Phe tRNA |
| 3269235 | 3269323 | + | 89 | 146297766 | Fjoh_R0063 | - | 15 Leu tRNA |
| 3353648 | 3353725 | + | 78 | 146297766 | Fjoh_R0064 | - | 13 Val tRNA |
| 3354107 | 3354184 | + | 78 | 146297766 | Fjoh_R0065 | - | 13 Val tRNA |
| 3525190 | 3525266 | + | 77 | 146297766 | Fjoh_R0066 | - | 11 Arg tRNA |
| 5118548 | 5118667 | - | 120 | 146297766 | Fjoh_R0067 | - | 5S ribosomal RNA |
| 5118824 | 5121697 | - | 2874 | 146297766 | Fjoh_R0068 | - | 23S ribosomal RNA |
| 5121886 | 5121962 | - | 77 | 146297766 | Fjoh_R0069 | - | 02 Ala tRNA |
| 5122103 | 5122176 | - | 74 | 146297766 | Fjoh_R0070 | - | 14 Ile tRNA |
| 5122301 | 5123819 | - | 1519 | 146297766 | Fjoh_R0071 | - | 16S ribosomal RNA |
| 5248419 | 5248499 | + | 81 | 146297766 | Fjoh_R0072 | - | 18 Tyr tRNA |
| 5465948 | 5466213 | - | 266 | 146297766 | Fjoh_R0073 | - | RNA component of RNase P |
| 5525783 | 5525882 | - | 100 | 146297766 | Fjoh_R0074 | - | SRP RNA; RNA component of signal recognition particle |
| 5575980 | 5576056 | - | 77 | 146297766 | Fjoh_R0075 | - | 11 Arg tRNA |
| 5576071 | 5576145 | - | 75 | 146297766 | Fjoh_R0076 | - | 03 Pro tRNA |
| 5576160 | 5576243 | - | 84 | 146297766 | Fjoh_R0077 | - | 08 Ser tRNA |
| 5696434 | 5696509 | - | 76 | 146297766 | Fjoh_R0078 | - | 09 His tRNA |
| 5739228 | 5739348 | - | 121 | 146297766 | Fjoh_R0079 | - | Xaa tRNA |
| 5787394 | 5787790 | + | 397 | 146297766 | Fjoh_R0080 | - | tmRNA |
| 5965190 | 5965261 | - | 72 | 146297766 | Fjoh_R0081 | - | 04 Glu tRNA |
| 5965304 | 5965378 | - | 75 | 146297766 | Fjoh_R0082 | - | 04 Glu tRNA |
| 6091459 | 6091532 | - | 74 | 146297766 | Fjoh_R0083 | - | 20 Trp tRNA |

