Геном прокариот/Материалы:NC 009455
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LOCUS NC_009455 1341892 bp DNA circular BCT 14-AUG-2007
DEFINITION Dehalococcoides sp. BAV1, complete genome.
ACCESSION NC_009455
VERSION NC_009455.1 GI:147668652
KEYWORDS .
SOURCE Dehalococcoides sp. BAV1
ORGANISM Dehalococcoides sp. BAV1
Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides.
REFERENCE 1 (bases 1 to 1341892)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Lowry,S., Clum,A.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Ritalahti,K.M., Loeffler,F. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Dehalococcoides sp. BAV1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1341892)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Lowry,S., Clum,A.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Ritalahti,K.M., Loeffler,F. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFERENCE 3 (bases 1 to 1341892)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000688.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000264
Source DNA and bacteria available from Frank Loeffler
(frank.loeffler@ce.gatech.edu)
Contacts: Frank Loeffler (frank.loeffler@ce.gatech.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 47151 | 50104 | + | 2954 | 147668652 | DehaBAV1_R0001 | - | 23S ribosomal RNA |
| 50199 | 50321 | + | 123 | 147668652 | DehaBAV1_R0002 | - | 5S ribosomal RNA |
| 57444 | 57519 | + | 76 | 147668652 | DehaBAV1_R0003 | - | 02 Ala tRNA |
| 223784 | 223859 | - | 76 | 147668652 | DehaBAV1_R0004 | - | 13 Val tRNA |
| 312176 | 312251 | - | 76 | 147668652 | DehaBAV1_R0005 | - | 02 Ala tRNA |
| 350362 | 350665 | + | 304 | 147668652 | DehaBAV1_R0006 | - | RNAse P |
| 372125 | 372199 | + | 75 | 147668652 | DehaBAV1_R0007 | - | 12 Thr tRNA |
| 403848 | 403922 | - | 75 | 147668652 | DehaBAV1_R0008 | - | 16 Met tRNA |
| 535171 | 535260 | - | 90 | 147668652 | DehaBAV1_R0009 | - | 08 Ser tRNA |
| 644324 | 644413 | - | 90 | 147668652 | DehaBAV1_R0010 | - | 08 Ser tRNA |
| 644450 | 644539 | - | 90 | 147668652 | DehaBAV1_R0011 | - | 08 Ser tRNA |
| 646274 | 646345 | + | 72 | 147668652 | DehaBAV1_R0012 | - | 11 Arg tRNA |
| 652466 | 652543 | + | 78 | 147668652 | DehaBAV1_R0013 | - | 03 Pro tRNA |
| 654991 | 655065 | - | 75 | 147668652 | DehaBAV1_R0014 | - | 01 Gly tRNA |
| 655617 | 655691 | + | 75 | 147668652 | DehaBAV1_R0015 | - | 16 Met tRNA |
| 667738 | 667814 | + | 77 | 147668652 | DehaBAV1_R0016 | - | 11 Arg tRNA |
| 677376 | 677460 | - | 85 | 147668652 | DehaBAV1_R0017 | - | 15 Leu tRNA |
| 679908 | 679984 | + | 77 | 147668652 | DehaBAV1_R0018 | - | 03 Pro tRNA |
| 719505 | 719580 | + | 76 | 147668652 | DehaBAV1_R0019 | - | 17 Phe tRNA |
| 719655 | 719741 | + | 87 | 147668652 | DehaBAV1_R0020 | - | 15 Leu tRNA |
| 719772 | 719845 | + | 74 | 147668652 | DehaBAV1_R0021 | - | 05 Gln tRNA |
| 719856 | 719930 | + | 75 | 147668652 | DehaBAV1_R0022 | - | 07 Asn tRNA |
| 726826 | 726898 | - | 73 | 147668652 | DehaBAV1_R0023 | - | 10 Lys tRNA |
| 760830 | 760904 | + | 75 | 147668652 | DehaBAV1_R0024 | - | 01 Gly tRNA |
| 782120 | 782195 | - | 76 | 147668652 | DehaBAV1_R0025 | - | 10 Lys tRNA |
| 839073 | 839148 | - | 76 | 147668652 | DehaBAV1_R0026 | - | 11 Arg tRNA |
| 839164 | 839239 | - | 76 | 147668652 | DehaBAV1_R0027 | - | 09 His tRNA |
| 874886 | 874961 | - | 76 | 147668652 | DehaBAV1_R0028 | - | 12 Thr tRNA |
| 875024 | 875107 | - | 84 | 147668652 | DehaBAV1_R0029 | - | 18 Tyr tRNA |
| 875147 | 875219 | - | 73 | 147668652 | DehaBAV1_R0030 | - | 12 Thr tRNA |
| 891868 | 891944 | - | 77 | 147668652 | DehaBAV1_R0031 | - | 14 Ile tRNA |
| 892247 | 893755 | - | 1509 | 147668652 | DehaBAV1_R0032 | - | 16S ribosomal RNA |
| 895133 | 895209 | - | 77 | 147668652 | DehaBAV1_R0033 | - | 04 Glu tRNA |
| 895222 | 895295 | - | 74 | 147668652 | DehaBAV1_R0034 | - | 05 Gln tRNA |
| 914980 | 915056 | + | 77 | 147668652 | DehaBAV1_R0035 | - | 06 Asp tRNA |
| 985134 | 985210 | - | 77 | 147668652 | DehaBAV1_R0036 | - | 13 Val tRNA |
| 1112963 | 1113037 | + | 75 | 147668652 | DehaBAV1_R0037 | - | 16 Met tRNA |
| 1171930 | 1172021 | - | 92 | 147668652 | DehaBAV1_R0038 | - | 08 Ser tRNA |
| 1226125 | 1226201 | + | 77 | 147668652 | DehaBAV1_R0039 | - | 20 Trp tRNA |
| 1226207 | 1226293 | + | 87 | 147668652 | DehaBAV1_R0040 | - | 15 Leu tRNA |
| 1226307 | 1226381 | + | 75 | 147668652 | DehaBAV1_R0041 | - | 01 Gly tRNA |
| 1226419 | 1226493 | + | 75 | 147668652 | DehaBAV1_R0042 | - | 19 Cys tRNA |
| 1227433 | 1227517 | + | 85 | 147668652 | DehaBAV1_R0043 | - | 15 Leu tRNA |
| 1243299 | 1243385 | + | 87 | 147668652 | DehaBAV1_R0044 | - | 15 Leu tRNA |
| 1243391 | 1243468 | + | 78 | 147668652 | DehaBAV1_R0045 | - | 11 Arg tRNA |
| 1243479 | 1243555 | + | 77 | 147668652 | DehaBAV1_R0046 | - | 13 Val tRNA |
| 1266790 | 1267140 | + | 351 | 147668652 | DehaBAV1_R0047 | - | tmRNA |
| 1276021 | 1276093 | + | 73 | 147668652 | DehaBAV1_R0048 | - | 02 Ala tRNA |
| 1295758 | 1295834 | + | 77 | 147668652 | DehaBAV1_R0049 | - | 11 Arg tRNA |
| 1325135 | 1325210 | - | 76 | 147668652 | DehaBAV1_R0050 | - | 04 Glu tRNA |
| 1337474 | 1337551 | + | 78 | 147668652 | DehaBAV1_R0051 | - | 03 Pro tRNA |

