Геном прокариот/Материалы:NC 009484
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LOCUS NC_009484 3389227 bp DNA circular BCT 14-AUG-2007
DEFINITION Acidiphilium cryptum JF-5, complete genome.
ACCESSION NC_009484
VERSION NC_009484.1 GI:148259021
KEYWORDS .
SOURCE Acidiphilium cryptum JF-5
ORGANISM Acidiphilium cryptum JF-5
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
Acetobacteraceae; Acidiphilium.
REFERENCE 1 (bases 1 to 3389227)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Acidiphilium cryptum JF-5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3389227)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3389227)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000697.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000181
Source DNA and bacteria available from Timothy Magnuson
(magntimo@isu.edu)
Contacts: Timothy Magnuson (magntimo@isu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 42985 | 43060 | + | 76 | 148259021 | Acry_R0001 | - | 10 Lys tRNA |
| 43236 | 43310 | - | 75 | 148259021 | Acry_R0002 | - | 12 Thr tRNA |
| 89466 | 89551 | + | 86 | 148259021 | Acry_R0003 | - | 18 Tyr tRNA |
| 269117 | 269206 | - | 90 | 148259021 | Acry_R0004 | - | 08 Ser tRNA |
| 308460 | 308536 | - | 77 | 148259021 | Acry_R0005 | - | 03 Pro tRNA |
| 316373 | 316462 | + | 90 | 148259021 | Acry_R0006 | - | 08 Ser tRNA |
| 409792 | 409866 | + | 75 | 148259021 | Acry_R0007 | - | 01 Gly tRNA |
| 708415 | 708489 | + | 75 | 148259021 | Acry_R0008 | - | 13 Val tRNA |
| 779659 | 779735 | - | 77 | 148259021 | Acry_R0009 | - | 11 Arg tRNA |
| 780126 | 780199 | - | 74 | 148259021 | Acry_R0010 | - | 03 Pro tRNA |
| 824823 | 824897 | + | 75 | 148259021 | Acry_R0011 | - | 12 Thr tRNA |
| 829736 | 829810 | + | 75 | 148259021 | Acry_R0012 | - | 05 Gln tRNA |
| 1017347 | 1017428 | + | 82 | 148259021 | Acry_R0013 | - | 15 Leu tRNA |
| 1024118 | 1024189 | + | 72 | 148259021 | Acry_R0014 | - | 13 Val tRNA |
| 1024515 | 1024591 | + | 77 | 148259021 | Acry_R0015 | - | 06 Asp tRNA |
| 1137874 | 1137950 | - | 77 | 148259021 | Acry_R0016 | - | 20 Trp tRNA |
| 1144880 | 1144953 | - | 74 | 148259021 | Acry_R0017 | - | 01 Gly tRNA |
| 1312606 | 1312681 | - | 76 | 148259021 | Acry_R0019 | - | 10 Lys tRNA |
| 1431753 | 1431842 | + | 90 | 148259021 | Acry_R0020 | - | 08 Ser tRNA |
| 1448307 | 1448382 | - | 76 | 148259021 | Acry_R0021 | - | 04 Glu tRNA |
| 1668357 | 1668433 | + | 77 | 148259021 | Acry_R0022 | - | 11 Arg tRNA |
| 1668714 | 1668788 | - | 75 | 148259021 | Acry_R0023 | - | 12 Thr tRNA |
| 1711813 | 1711887 | + | 75 | 148259021 | Acry_R0024 | - | 16 Met tRNA |
| 1734359 | 1734434 | - | 76 | 148259021 | Acry_R0025 | - | 02 Ala tRNA |
| 1843982 | 1844067 | + | 86 | 148259021 | Acry_R0026 | - | 15 Leu tRNA |
| 1863143 | 1863225 | + | 83 | 148259021 | Acry_R0027 | - | 15 Leu tRNA |
| 1867251 | 1867327 | + | 77 | 148259021 | Acry_R0028 | - | 03 Pro tRNA |
| 1900697 | 1900772 | + | 76 | 148259021 | Acry_R0029 | - | 09 His tRNA |
| 1960152 | 1960225 | - | 74 | 148259021 | Acry_R0030 | - | 19 Cys tRNA |
| 2007442 | 2007518 | - | 77 | 148259021 | Acry_R0031 | - | 16 Met tRNA |
| 2007537 | 2007664 | - | 128 | 148259021 | Acry_R0032 | - | 5S ribosomal RNA |
| 2007753 | 2010488 | - | 2736 | 148259021 | Acry_R0033 | - | 23S ribosomal RNA |
| 2010925 | 2010997 | - | 73 | 148259021 | Acry_R0034 | - | 02 Ala tRNA |
| 2011118 | 2011191 | - | 74 | 148259021 | Acry_R0035 | - | 14 Ile tRNA |
| 2011416 | 2012908 | - | 1493 | 148259021 | Acry_R0036 | - | 16S ribosomal RNA |
| 2182743 | 2182818 | - | 76 | 148259021 | Acry_R0037 | - | 17 Phe tRNA |
| 2193703 | 2193808 | - | 106 | 148259021 | Acry_R0038 | - | SRP RNA; RNA component of signal recognition particle |
| 2207609 | 2207682 | + | 74 | 148259021 | Acry_R0039 | - | 05 Gln tRNA |
| 2351947 | 2352023 | + | 77 | 148259021 | Acry_R0040 | - | 11 Arg tRNA |
| 2521461 | 2521546 | - | 86 | 148259021 | Acry_R0041 | - | 15 Leu tRNA |
| 2523927 | 2524019 | + | 93 | 148259021 | Acry_R0042 | - | 08 Ser tRNA |
| 2585597 | 2585673 | - | 77 | 148259021 | Acry_R0043 | - | 16 Met tRNA |
| 2585692 | 2585819 | - | 128 | 148259021 | Acry_R0044 | - | 5S ribosomal RNA |
| 2585908 | 2588643 | - | 2736 | 148259021 | Acry_R0045 | - | 23S ribosomal RNA |
| 2589080 | 2589152 | - | 73 | 148259021 | Acry_R0046 | - | 02 Ala tRNA |
| 2589273 | 2589346 | - | 74 | 148259021 | Acry_R0047 | - | 14 Ile tRNA |
| 2589571 | 2591063 | - | 1493 | 148259021 | Acry_R0048 | - | 16S ribosomal RNA |
| 2682423 | 2682496 | - | 74 | 148259021 | Acry_R0049 | - | 01 Gly tRNA |
| 2743548 | 2743623 | - | 76 | 148259021 | Acry_R0050 | - | 16 Met tRNA |
| 2915409 | 2915484 | - | 76 | 148259021 | Acry_R0051 | - | 02 Ala tRNA |
| 2978235 | 2978310 | + | 76 | 148259021 | Acry_R0052 | - | 04 Glu tRNA |
| 3076810 | 3076884 | + | 75 | 148259021 | Acry_R0053 | - | 13 Val tRNA |
| 3081831 | 3081907 | - | 77 | 148259021 | Acry_R0054 | - | 11 Arg tRNA |
| 3151334 | 3151671 | + | 338 | 148259021 | Acry_R0055 | - | RNase P |
| 3177382 | 3177457 | - | 76 | 148259021 | Acry_R0056 | - | 07 Asn tRNA |

