Геном прокариот/Материалы:NC 009511
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LOCUS NC_009511 5382261 bp DNA circular BCT 14-AUG-2007
DEFINITION Sphingomonas wittichii RW1, complete genome.
ACCESSION NC_009511
VERSION NC_009511.1 GI:148552929
KEYWORDS .
SOURCE Sphingomonas wittichii RW1
ORGANISM Sphingomonas wittichii RW1
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingomonas.
REFERENCE 1 (bases 1 to 5382261)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Halden,R.U., Miller,T.R.,
Salzberg,S.L., Eisen,J.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Sphingomonas wittichii RW1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5382261)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-JUN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5382261)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Halden,R.U., Miller,T.R.,
Salzberg,S.L., Eisen,J.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (08-MAY-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000699.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4002524
Source DNA and bacteria available from Rolf Halden
(rhalden@jhsph.edu)
Contacts: Rolf Halden (rhalden@jhsph.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 47180 | 47254 | + | 75 | 148552929 | Swit_R0001 | - | 13 Val tRNA |
| 53279 | 53379 | + | 101 | 148552929 | Swit_R0002 | - | SRP RNA; RNA component of signal recognition particle |
| 68827 | 69157 | + | 331 | 148552929 | Swit_R0003 | - | RNase P |
| 130034 | 130108 | - | 75 | 148552929 | Swit_R0004 | - | 13 Val tRNA |
| 204481 | 204557 | - | 77 | 148552929 | Swit_R0005 | - | 11 Arg tRNA |
| 413943 | 414018 | - | 76 | 148552929 | Swit_R0006 | - | 04 Glu tRNA |
| 450513 | 450589 | - | 77 | 148552929 | Swit_R0007 | - | 11 Arg tRNA |
| 515675 | 515764 | - | 90 | 148552929 | Swit_R0008 | - | 08 Ser tRNA |
| 534208 | 534283 | + | 76 | 148552929 | Swit_R0009 | - | 10 Lys tRNA |
| 598899 | 598972 | + | 74 | 148552929 | Swit_R0010 | - | 01 Gly tRNA |
| 605479 | 605555 | - | 77 | 148552929 | Swit_R0011 | - | 11 Arg tRNA |
| 647721 | 647805 | - | 85 | 148552929 | Swit_R0012 | - | 15 Leu tRNA |
| 719543 | 719629 | + | 87 | 148552929 | Swit_R0013 | - | 15 Leu tRNA |
| 941478 | 941552 | - | 75 | 148552929 | Swit_R0014 | - | 05 Gln tRNA |
| 976105 | 976179 | + | 75 | 148552929 | Swit_R0015 | - | 12 Thr tRNA |
| 1216985 | 1217059 | - | 75 | 148552929 | Swit_R0016 | - | 12 Thr tRNA |
| 1233193 | 1233266 | + | 74 | 148552929 | Swit_R0017 | - | 19 Cys tRNA |
| 1375211 | 1375286 | - | 76 | 148552929 | Swit_R0018 | - | 10 Lys tRNA |
| 1564014 | 1564090 | + | 77 | 148552929 | Swit_R0019 | - | 11 Arg tRNA |
| 1600789 | 1600865 | - | 77 | 148552929 | Swit_R0020 | - | 03 Pro tRNA |
| 1690046 | 1690120 | + | 75 | 148552929 | Swit_R0021 | - | 07 Asn tRNA |
| 2306328 | 2306404 | - | 77 | 148552929 | Swit_R0022 | - | 16 Met tRNA |
| 2473596 | 2473669 | - | 74 | 148552929 | Swit_R0023 | - | 01 Gly tRNA |
| 2696888 | 2696973 | - | 86 | 148552929 | Swit_R0024 | - | 18 Tyr tRNA |
| 2730852 | 2730927 | + | 76 | 148552929 | Swit_R0025 | - | 02 Ala tRNA |
| 2808482 | 2808558 | - | 77 | 148552929 | Swit_R0026 | - | 16 Met tRNA |
| 2808722 | 2808841 | - | 120 | 148552929 | Swit_R0027 | - | 5S ribosomal RNA |
| 2808933 | 2811552 | - | 2620 | 148552929 | Swit_R0028 | - | 23S ribosomal RNA |
| 2811992 | 2812067 | - | 76 | 148552929 | Swit_R0029 | - | 02 Ala tRNA |
| 2812084 | 2812160 | - | 77 | 148552929 | Swit_R0030 | - | 14 Ile tRNA |
| 2812326 | 2813824 | - | 1499 | 148552929 | Swit_R0031 | - | 16S ribosomal RNA |
| 2821947 | 2822023 | + | 77 | 148552929 | Swit_R0032 | - | 03 Pro tRNA |
| 2825070 | 2825146 | + | 77 | 148552929 | Swit_R0033 | - | 03 Pro tRNA |
| 2843394 | 2843469 | + | 76 | 148552929 | Swit_R0034 | - | 20 Trp tRNA |
| 3302252 | 3302338 | + | 87 | 148552929 | Swit_R0035 | - | 15 Leu tRNA |
| 3680506 | 3680582 | - | 77 | 148552929 | Swit_R0036 | - | 03 Pro tRNA |
| 3712655 | 3712745 | + | 91 | 148552929 | Swit_R0037 | - | 08 Ser tRNA |
| 3762893 | 3762968 | - | 76 | 148552929 | Swit_R0038 | - | 02 Ala tRNA |
| 3802685 | 3802761 | + | 77 | 148552929 | Swit_R0039 | - | 06 Asp tRNA |
| 3844814 | 3846312 | + | 1499 | 148552929 | Swit_R0040 | - | 16S ribosomal RNA |
| 3846477 | 3846553 | + | 77 | 148552929 | Swit_R0041 | - | 14 Ile tRNA |
| 3846570 | 3846645 | + | 76 | 148552929 | Swit_R0042 | - | 02 Ala tRNA |
| 3847085 | 3849704 | + | 2620 | 148552929 | Swit_R0043 | - | 23S ribosomal RNA |
| 3849797 | 3849916 | + | 120 | 148552929 | Swit_R0044 | - | 5S ribosomal RNA |
| 3850079 | 3850155 | + | 77 | 148552929 | Swit_R0045 | - | 16 Met tRNA |
| 4030547 | 4030621 | + | 75 | 148552929 | Swit_R0046 | - | 01 Gly tRNA |
| 4277079 | 4277168 | - | 90 | 148552929 | Swit_R0047 | - | 08 Ser tRNA |
| 4375752 | 4375828 | + | 77 | 148552929 | Swit_R0048 | - | 09 His tRNA |
| 4383311 | 4383397 | + | 87 | 148552929 | Swit_R0049 | - | 15 Leu tRNA |
| 4517782 | 4517857 | + | 76 | 148552929 | Swit_R0050 | - | 17 Phe tRNA |
| 4913949 | 4914024 | + | 76 | 148552929 | Swit_R0051 | - | 13 Val tRNA |
| 5028397 | 5028472 | + | 76 | 148552929 | Swit_R0052 | - | 16 Met tRNA |
| 5063786 | 5063861 | + | 76 | 148552929 | Swit_R0053 | - | 12 Thr tRNA |
| 5188077 | 5188150 | + | 74 | 148552929 | Swit_R0054 | - | 05 Gln tRNA |
| 5207447 | 5207522 | + | 76 | 148552929 | Swit_R0055 | - | 04 Glu tRNA |
| 5252412 | 5252504 | + | 93 | 148552929 | Swit_R0056 | - | 08 Ser tRNA |

