Геном прокариот/Материалы:NC 009513
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_009513 1999618 bp DNA circular BCT 14-AUG-2007
DEFINITION Lactobacillus reuteri F275, complete genome.
ACCESSION NC_009513
VERSION NC_009513.1 GI:148543243
KEYWORDS .
SOURCE Lactobacillus reuteri F275
ORGANISM Lactobacillus reuteri F275
Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
Lactobacillus.
REFERENCE 1 (bases 1 to 1999618)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Kim,E., Walter,J., Heng,N.C.K., Tannock,G.W. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Lactobacillus reuteri DSM 20016
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1999618)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-JUN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1999618)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Kim,E., Walter,J., Heng,N.C.K., Tannock,G.W. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000705.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000135
Source DNA available from Gerald Tannock
(gerald.tannock@stonebow.otago.ac.nz)
Bacteria available from DSMZ: DSM 20016
Contacts: Gerald Tannock (gerald.tannock@stonebow.otago.ac.nz)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 18213 | 18288 | - | 76 | 148543243 | Lreu_R0001 | - | 10 Lys tRNA |
| 20774 | 20849 | - | 76 | 148543243 | Lreu_R0002 | - | 10 Lys tRNA |
| 177719 | 179305 | + | 1587 | 148543243 | Lreu_R0003 | - | 16S ribosomal RNA |
| 179499 | 182423 | + | 2925 | 148543243 | Lreu_R0004 | - | 23S ribosomal RNA |
| 182502 | 182620 | + | 119 | 148543243 | Lreu_R0005 | - | 5S ribosomal RNA |
| 182702 | 182774 | + | 73 | 148543243 | Lreu_R0006 | - | 12 Thr tRNA |
| 204045 | 204119 | + | 75 | 148543243 | Lreu_R0007 | - | 09 His tRNA |
| 233600 | 233673 | + | 74 | 148543243 | Lreu_R0008 | - | 12 Thr tRNA |
| 312384 | 313970 | + | 1587 | 148543243 | Lreu_R0009 | - | 16S ribosomal RNA |
| 314164 | 317088 | + | 2925 | 148543243 | Lreu_R0010 | - | 23S ribosomal RNA |
| 317167 | 317286 | + | 120 | 148543243 | Lreu_R0011 | - | 5S ribosomal RNA |
| 317289 | 317361 | + | 73 | 148543243 | Lreu_R0012 | - | 07 Asn tRNA |
| 317408 | 317480 | + | 73 | 148543243 | Lreu_R0013 | - | 12 Thr tRNA |
| 320661 | 320733 | + | 73 | 148543243 | Lreu_R0014 | - | 07 Asn tRNA |
| 324334 | 324416 | + | 83 | 148543243 | Lreu_R0015 | - | 18 Tyr tRNA |
| 324427 | 324498 | + | 72 | 148543243 | Lreu_R0016 | - | 05 Gln tRNA |
| 335218 | 335306 | + | 89 | 148543243 | Lreu_R0017 | - | 15 Leu tRNA |
| 372805 | 372894 | + | 90 | 148543243 | Lreu_R0018 | - | SRP RNA; RNA component of signal recognition particle |
| 469226 | 469596 | + | 371 | 148543243 | Lreu_R0019 | - | tmRNA |
| 485359 | 485431 | + | 73 | 148543243 | Lreu_R0020 | - | 05 Gln tRNA |
| 487534 | 487606 | + | 73 | 148543243 | Lreu_R0021 | - | 04 Glu tRNA |
| 624373 | 625959 | + | 1587 | 148543243 | Lreu_R0022 | - | 16S ribosomal RNA |
| 626044 | 626118 | + | 75 | 148543243 | Lreu_R0023 | - | 14 Ile tRNA |
| 626122 | 626194 | + | 73 | 148543243 | Lreu_R0024 | - | 02 Ala tRNA |
| 626353 | 629277 | + | 2925 | 148543243 | Lreu_R0025 | - | 23S ribosomal RNA |
| 629355 | 629474 | + | 120 | 148543243 | Lreu_R0026 | - | 5S ribosomal RNA |
| 629476 | 629548 | + | 73 | 148543243 | Lreu_R0027 | - | 13 Val tRNA |
| 629567 | 629639 | + | 73 | 148543243 | Lreu_R0028 | - | 10 Lys tRNA |
| 629683 | 629755 | + | 73 | 148543243 | Lreu_R0029 | - | 12 Thr tRNA |
| 629765 | 629836 | + | 72 | 148543243 | Lreu_R0030 | - | 01 Gly tRNA |
| 629853 | 629938 | + | 86 | 148543243 | Lreu_R0031 | - | 15 Leu tRNA |
| 629947 | 630020 | + | 74 | 148543243 | Lreu_R0032 | - | 11 Arg tRNA |
| 630026 | 630099 | + | 74 | 148543243 | Lreu_R0033 | - | 03 Pro tRNA |
| 630130 | 630203 | + | 74 | 148543243 | Lreu_R0034 | - | 16 Met tRNA |
| 630219 | 630295 | + | 77 | 148543243 | Lreu_R0035 | - | 16 Met tRNA |
| 630345 | 630432 | + | 88 | 148543243 | Lreu_R0036 | - | 08 Ser tRNA |
| 630441 | 630514 | + | 74 | 148543243 | Lreu_R0037 | - | 16 Met tRNA |
| 630519 | 630593 | + | 75 | 148543243 | Lreu_R0038 | - | 06 Asp tRNA |
| 630603 | 630675 | + | 73 | 148543243 | Lreu_R0039 | - | 17 Phe tRNA |
| 630691 | 630761 | + | 71 | 148543243 | Lreu_R0040 | - | 01 Gly tRNA |
| 630771 | 630845 | + | 75 | 148543243 | Lreu_R0041 | - | 14 Ile tRNA |
| 630848 | 630935 | + | 88 | 148543243 | Lreu_R0042 | - | 08 Ser tRNA |
| 630940 | 631011 | + | 72 | 148543243 | Lreu_R0043 | - | 04 Glu tRNA |
| 631022 | 631095 | + | 74 | 148543243 | Lreu_R0044 | - | 16 Met tRNA |
| 631100 | 631174 | + | 75 | 148543243 | Lreu_R0045 | - | 06 Asp tRNA |
| 639554 | 641140 | + | 1587 | 148543243 | Lreu_R0046 | - | 16S ribosomal RNA |
| 641225 | 641299 | + | 75 | 148543243 | Lreu_R0047 | - | 14 Ile tRNA |
| 641303 | 641375 | + | 73 | 148543243 | Lreu_R0048 | - | 02 Ala tRNA |
| 641534 | 644458 | + | 2925 | 148543243 | Lreu_R0049 | - | 23S ribosomal RNA |
| 644537 | 644656 | + | 120 | 148543243 | Lreu_R0050 | - | 5S ribosomal RNA |
| 741822 | 741909 | - | 88 | 148543243 | Lreu_R0051 | - | 08 Ser tRNA |
| 1030554 | 1030625 | + | 72 | 148543243 | Lreu_R0052 | - | 11 Arg tRNA |
| 1035974 | 1036045 | - | 72 | 148543243 | Lreu_R0053 | - | 05 Gln tRNA |
| 1036085 | 1036157 | - | 73 | 148543243 | Lreu_R0054 | - | 13 Val tRNA |
| 1036163 | 1036234 | - | 72 | 148543243 | Lreu_R0055 | - | 04 Glu tRNA |
| 1036252 | 1036322 | - | 71 | 148543243 | Lreu_R0056 | - | 01 Gly tRNA |
| 1036507 | 1036580 | - | 74 | 148543243 | Lreu_R0057 | - | 03 Pro tRNA |
| 1036584 | 1036672 | - | 89 | 148543243 | Lreu_R0058 | - | 15 Leu tRNA |
| 1036689 | 1036760 | - | 72 | 148543243 | Lreu_R0059 | - | 01 Gly tRNA |
| 1036766 | 1036837 | - | 72 | 148543243 | Lreu_R0060 | - | 04 Glu tRNA |
| 1047022 | 1047095 | + | 74 | 148543243 | Lreu_R0061 | - | 03 Pro tRNA |
| 1074436 | 1074556 | - | 121 | 148543243 | Lreu_R0062 | - | 5S ribosomal RNA |
| 1074635 | 1077558 | - | 2924 | 148543243 | Lreu_R0063 | - | 23S ribosomal RNA |
| 1077752 | 1079338 | - | 1587 | 148543243 | Lreu_R0064 | - | 16S ribosomal RNA |
| 1244027 | 1244100 | + | 74 | 148543243 | Lreu_R0065 | - | 11 Arg tRNA |
| 1323697 | 1323767 | - | 71 | 148543243 | Lreu_R0066 | - | 01 Gly tRNA |
| 1329501 | 1329587 | - | 87 | 148543243 | Lreu_R0067 | - | 15 Leu tRNA |
| 1369035 | 1369119 | - | 85 | 148543243 | Lreu_R0068 | - | 15 Leu tRNA |
| 1369134 | 1369204 | - | 71 | 148543243 | Lreu_R0069 | - | 19 Cys tRNA |
| 1369241 | 1369315 | - | 75 | 148543243 | Lreu_R0070 | - | 09 His tRNA |
| 1369333 | 1369403 | - | 71 | 148543243 | Lreu_R0071 | - | 20 Trp tRNA |
| 1369410 | 1369492 | - | 83 | 148543243 | Lreu_R0072 | - | 18 Tyr tRNA |
| 1369498 | 1369570 | - | 73 | 148543243 | Lreu_R0073 | - | 17 Phe tRNA |
| 1369607 | 1369679 | - | 73 | 148543243 | Lreu_R0074 | - | 13 Val tRNA |
| 1369685 | 1369756 | - | 72 | 148543243 | Lreu_R0075 | - | 04 Glu tRNA |
| 1369764 | 1369855 | - | 92 | 148543243 | Lreu_R0076 | - | 08 Ser tRNA |
| 1369902 | 1370022 | - | 121 | 148543243 | Lreu_R0077 | - | 5S ribosomal RNA |
| 1370101 | 1373025 | - | 2925 | 148543243 | Lreu_R0078 | - | 23S ribosomal RNA |
| 1373183 | 1373255 | - | 73 | 148543243 | Lreu_R0079 | - | 02 Ala tRNA |
| 1373259 | 1373333 | - | 75 | 148543243 | Lreu_R0080 | - | 14 Ile tRNA |
| 1373419 | 1375005 | - | 1587 | 148543243 | Lreu_R0081 | - | 16S ribosomal RNA |
| 1448882 | 1448954 | - | 73 | 148543243 | Lreu_R0082 | - | 11 Arg tRNA |
| 1551234 | 1551307 | - | 74 | 148543243 | Lreu_R0083 | - | 03 Pro tRNA |
| 1551350 | 1551426 | - | 77 | 148543243 | Lreu_R0084 | - | 11 Arg tRNA |
| 1551432 | 1551503 | - | 72 | 148543243 | Lreu_R0085 | - | 01 Gly tRNA |
| 1551594 | 1551676 | - | 83 | 148543243 | Lreu_R0086 | - | 15 Leu tRNA |
| 1551684 | 1551756 | - | 73 | 148543243 | Lreu_R0087 | - | 13 Val tRNA |
| 1573126 | 1573200 | - | 75 | 148543243 | Lreu_R0088 | - | 06 Asp tRNA |

