Геном прокариот/Материалы:NC 009664
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LOCUS NC_009664 4761183 bp DNA linear BCT 25-JUL-2007
DEFINITION Kineococcus radiotolerans SRS30216, complete genome.
ACCESSION NC_009664
VERSION NC_009664.1 GI:152963972
KEYWORDS .
SOURCE Kineococcus radiotolerans SRS30216
ORGANISM Kineococcus radiotolerans SRS30216
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
Frankineae; Kineosporiaceae; Kineococcus.
REFERENCE 1 (bases 1 to 4761183)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Bagwell,C.E.,
Shimkets,L., Berry,C.J., Fliermans,C. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Kineococcus radiotolerans
SRS30216
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4761183)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4761183)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Bagwell,C.E.,
Shimkets,L., Berry,C.J., Fliermans,C. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (04-JUL-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000750.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3436090
Source DNA and bacteria available from Christopher E. Bagwell
(christopher.bagwell@srnl.doe.gov)
Contacts: Christopher E. Bagwell (christopher.bagwell@srnl.doe.gov)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Additional Notes: Kineococcus radiotolerans SRS30216 has 3
replicons, a chromosome and two plasmids. The chromosome and the
largest plasmid, plasmid 1, both appear to be linear. We have
performed various pcr reactions in an attempt to circularize them.
None have succeeded.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 12075 | 12151 | + | 77 | 152963972 | Krad_R0001 | - | 14 Ile tRNA |
| 24936 | 25011 | + | 76 | 152963972 | Krad_R0002 | - | 02 Ala tRNA |
| 79441 | 79524 | + | 84 | 152963972 | Krad_R0003 | - | 15 Leu tRNA |
| 334879 | 334974 | + | 96 | 152963972 | Krad_R0004 | - | 08 Ser tRNA |
| 455758 | 455834 | + | 77 | 152963972 | Krad_R0005 | - | 03 Pro tRNA |
| 493327 | 493419 | - | 93 | 152963972 | Krad_R0006 | - | SRP RNA; RNA component of signal recognition particle |
| 493531 | 493618 | + | 88 | 152963972 | Krad_R0007 | - | 08 Ser tRNA |
| 494774 | 494863 | - | 90 | 152963972 | Krad_R0008 | - | 08 Ser tRNA |
| 499324 | 499396 | - | 73 | 152963972 | Krad_R0009 | - | 11 Arg tRNA |
| 499570 | 499663 | - | 94 | 152963972 | Krad_R0010 | - | 08 Ser tRNA |
| 537762 | 537838 | + | 77 | 152963972 | Krad_R0011 | - | 12 Thr tRNA |
| 704531 | 704612 | + | 82 | 152963972 | Krad_R0012 | - | 18 Tyr tRNA |
| 704706 | 704777 | + | 72 | 152963972 | Krad_R0013 | - | 12 Thr tRNA |
| 704807 | 704879 | + | 73 | 152963972 | Krad_R0014 | - | 16 Met tRNA |
| 713973 | 714048 | + | 76 | 152963972 | Krad_R0015 | - | 20 Trp tRNA |
| 873295 | 873370 | + | 76 | 152963972 | Krad_R0016 | - | 10 Lys tRNA |
| 985221 | 985296 | + | 76 | 152963972 | Krad_R0017 | - | 12 Thr tRNA |
| 1101585 | 1101656 | + | 72 | 152963972 | Krad_R0018 | - | 05 Gln tRNA |
| 1135911 | 1135994 | + | 84 | 152963972 | Krad_R0019 | - | 15 Leu tRNA |
| 1264019 | 1264095 | + | 77 | 152963972 | Krad_R0020 | - | 16 Met tRNA |
| 1264230 | 1264306 | + | 77 | 152963972 | Krad_R0021 | - | 16 Met tRNA |
| 1326369 | 1326443 | - | 75 | 152963972 | Krad_R0022 | - | 11 Arg tRNA |
| 1450054 | 1450125 | + | 72 | 152963972 | Krad_R0023 | - | 05 Gln tRNA |
| 1450214 | 1450286 | + | 73 | 152963972 | Krad_R0024 | - | 04 Glu tRNA |
| 1450332 | 1450404 | + | 73 | 152963972 | Krad_R0025 | - | 04 Glu tRNA |
| 1718229 | 1718324 | + | 96 | 152963972 | Krad_R0026 | - | Sec tRNA |
| 1807886 | 1807970 | + | 85 | 152963972 | Krad_R0027 | - | 15 Leu tRNA |
| 3035499 | 3035572 | + | 74 | 152963972 | Krad_R0028 | - | 15 Leu tRNA |
| 3146173 | 3146247 | - | 75 | 152963972 | Krad_R0029 | - | 13 Val tRNA |
| 3147788 | 3147860 | + | 73 | 152963972 | Krad_R0030 | - | 01 Gly tRNA |
| 3147895 | 3147968 | + | 74 | 152963972 | Krad_R0031 | - | 19 Cys tRNA |
| 3148003 | 3148077 | + | 75 | 152963972 | Krad_R0032 | - | 13 Val tRNA |
| 3193009 | 3193085 | - | 77 | 152963972 | Krad_R0033 | - | 03 Pro tRNA |
| 3235427 | 3235542 | - | 116 | 152963972 | Krad_R0034 | - | 5S ribosomal RNA |
| 3235747 | 3238893 | - | 3147 | 152963972 | Krad_R0035 | - | 23S ribosomal RNA |
| 3239500 | 3241011 | - | 1512 | 152963972 | Krad_R0036 | - | 16S ribosomal RNA |
| 3426178 | 3426493 | - | 316 | 152963972 | Krad_R0037 | - | RNA component of RNaseP |
| 3436766 | 3436841 | + | 76 | 152963972 | Krad_R0038 | - | 13 Val tRNA |
| 3456585 | 3456661 | - | 77 | 152963972 | Krad_R0039 | - | 16 Met tRNA |
| 3458764 | 3458836 | - | 73 | 152963972 | Krad_R0040 | - | 07 Asn tRNA |
| 3559912 | 3559987 | - | 76 | 152963972 | Krad_R0041 | - | 02 Ala tRNA |
| 3648191 | 3648264 | - | 74 | 152963972 | Krad_R0042 | - | 03 Pro tRNA |
| 3648368 | 3648441 | + | 74 | 152963972 | Krad_R0043 | - | 01 Gly tRNA |
| 3683908 | 3683980 | + | 73 | 152963972 | Krad_R0044 | - | 11 Arg tRNA |
| 3837067 | 3837142 | - | 76 | 152963972 | Krad_R0045 | - | 02 Ala tRNA |
| 3860501 | 3860573 | + | 73 | 152963972 | Krad_R0046 | - | 11 Arg tRNA |
| 3877860 | 3877935 | + | 76 | 152963972 | Krad_R0047 | - | 09 His tRNA |
| 3879349 | 3879424 | + | 76 | 152963972 | Krad_R0048 | - | 10 Lys tRNA |
| 3918235 | 3918316 | + | 82 | 152963972 | Krad_R0049 | - | 15 Leu tRNA |
| 3936472 | 3936836 | - | 365 | 152963972 | Krad_R0050 | - | tmRNA |
| 3963079 | 3963194 | - | 116 | 152963972 | Krad_R0051 | - | 5S ribosomal RNA |
| 3963399 | 3966545 | - | 3147 | 152963972 | Krad_R0052 | - | 23S ribosomal RNA |
| 3967152 | 3968663 | - | 1512 | 152963972 | Krad_R0053 | - | 16S ribosomal RNA |
| 4229114 | 4229186 | + | 73 | 152963972 | Krad_R0054 | - | 04 Glu tRNA |
| 4229288 | 4229361 | + | 74 | 152963972 | Krad_R0055 | - | 06 Asp tRNA |
| 4229393 | 4229468 | + | 76 | 152963972 | Krad_R0056 | - | 17 Phe tRNA |
| 4440206 | 4440279 | - | 74 | 152963972 | Krad_R0057 | - | 01 Gly tRNA |
| 4577008 | 4577123 | - | 116 | 152963972 | Krad_R0058 | - | 5S ribosomal RNA |
| 4577328 | 4580474 | - | 3147 | 152963972 | Krad_R0059 | - | 23S ribosomal RNA |
| 4581081 | 4582592 | - | 1512 | 152963972 | Krad_R0060 | - | 16S ribosomal RNA |
| 4664408 | 4664523 | - | 116 | 152963972 | Krad_R0061 | - | 5S ribosomal RNA |
| 4664728 | 4667874 | - | 3147 | 152963972 | Krad_R0062 | - | 23S ribosomal RNA |
| 4668481 | 4669992 | - | 1512 | 152963972 | Krad_R0063 | - | 16S ribosomal RNA |
| 4721666 | 4721738 | + | 73 | 152963972 | Krad_R0064 | - | 01 Gly tRNA |

