Геном прокариот/Материалы:NC 009720
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LOCUS NC_009720 5308934 bp DNA circular BCT 05-SEP-2007
DEFINITION Xanthobacter autotrophicus Py2, complete genome.
ACCESSION NC_009720
VERSION NC_009720.1 GI:154243958
KEYWORDS .
SOURCE Xanthobacter autotrophicus Py2
ORGANISM Xanthobacter autotrophicus Py2
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Xanthobacteraceae; Xanthobacter.
REFERENCE 1 (bases 1 to 5308934)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D.,
Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Brainard,J.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Ensigns,S.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Xanthobacter autotrophicus Py2
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5308934)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5308934)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D.,
Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Brainard,J.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Ensigns,S.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000781.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000362
Source DNA and bacteria available from Scott A. Ensigns
(ensigns@cc.usu.edu)
Contacts: Scott A. Ensigns (ensigns@cc.usu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 219524 | 219613 | + | 90 | 154243958 | Xaut_R0001 | - | 08 Ser tRNA |
| 280011 | 280086 | - | 76 | 154243958 | Xaut_R0002 | - | 04 Glu tRNA |
| 433413 | 433489 | - | 77 | 154243958 | Xaut_R0003 | - | 16 Met tRNA |
| 587540 | 587616 | + | 77 | 154243958 | Xaut_R0004 | - | 11 Arg tRNA |
| 736313 | 736404 | - | 92 | 154243958 | Xaut_R0005 | - | Sec tRNA |
| 1013945 | 1015422 | + | 1478 | 154243958 | Xaut_R0006 | - | 16S ribosomal RNA |
| 1015608 | 1015684 | + | 77 | 154243958 | Xaut_R0007 | - | 14 Ile tRNA |
| 1015777 | 1015852 | + | 76 | 154243958 | Xaut_R0008 | - | 02 Ala tRNA |
| 1016239 | 1019068 | + | 2830 | 154243958 | Xaut_R0009 | - | 23S ribosomal RNA |
| 1019153 | 1019266 | + | 114 | 154243958 | Xaut_R0010 | - | 5S ribosomal RNA |
| 1272852 | 1272927 | - | 76 | 154243958 | Xaut_R0011 | - | 02 Ala tRNA |
| 1283240 | 1283315 | + | 76 | 154243958 | Xaut_R0012 | - | 02 Ala tRNA |
| 1283392 | 1283467 | + | 76 | 154243958 | Xaut_R0013 | - | 02 Ala tRNA |
| 1530074 | 1530149 | + | 76 | 154243958 | Xaut_R0014 | - | 10 Lys tRNA |
| 1821675 | 1821741 | - | 67 | 154243958 | Xaut_R0015 | - | 08 Ser tRNA |
| 1936017 | 1936103 | - | 87 | 154243958 | Xaut_R0016 | - | 15 Leu tRNA |
| 1989364 | 1989695 | + | 332 | 154243958 | Xaut_R0017 | - | RNA component of RNaseP |
| 2150387 | 2151864 | + | 1478 | 154243958 | Xaut_R0018 | - | 16S ribosomal RNA |
| 2152050 | 2152126 | + | 77 | 154243958 | Xaut_R0019 | - | 14 Ile tRNA |
| 2152219 | 2152294 | + | 76 | 154243958 | Xaut_R0020 | - | 02 Ala tRNA |
| 2152681 | 2155510 | + | 2830 | 154243958 | Xaut_R0021 | - | 23S ribosomal RNA |
| 2155595 | 2155708 | + | 114 | 154243958 | Xaut_R0022 | - | 5S ribosomal RNA |
| 2430461 | 2430562 | - | 102 | 154243958 | Xaut_R0023 | - | SRP RNA; RNA component of signal recognition particle |
| 2494497 | 2494573 | + | 77 | 154243958 | Xaut_R0024 | - | 11 Arg tRNA |
| 2568867 | 2568941 | + | 75 | 154243958 | Xaut_R0025 | - | 01 Gly tRNA |
| 2776973 | 2777047 | - | 75 | 154243958 | Xaut_R0026 | - | 05 Gln tRNA |
| 2942657 | 2942746 | + | 90 | 154243958 | Xaut_R0027 | - | 08 Ser tRNA |
| 3137146 | 3137220 | - | 75 | 154243958 | Xaut_R0028 | - | 13 Val tRNA |
| 3180210 | 3180286 | + | 77 | 154243958 | Xaut_R0029 | - | 11 Arg tRNA |
| 3265765 | 3265839 | - | 75 | 154243958 | Xaut_R0030 | - | 12 Thr tRNA |
| 3566432 | 3566506 | - | 75 | 154243958 | Xaut_R0031 | - | 13 Val tRNA |
| 3623908 | 3623981 | + | 74 | 154243958 | Xaut_R0032 | - | 05 Gln tRNA |
| 3678595 | 3678681 | + | 87 | 154243958 | Xaut_R0033 | - | 15 Leu tRNA |
| 3682382 | 3682457 | - | 76 | 154243958 | Xaut_R0034 | - | 12 Thr tRNA |
| 3732374 | 3732448 | - | 75 | 154243958 | Xaut_R0035 | - | 12 Thr tRNA |
| 3735976 | 3736060 | + | 85 | 154243958 | Xaut_R0036 | - | 18 Tyr tRNA |
| 3736441 | 3736514 | + | 74 | 154243958 | Xaut_R0037 | - | 01 Gly tRNA |
| 3739072 | 3739148 | + | 77 | 154243958 | Xaut_R0038 | - | 20 Trp tRNA |
| 3833627 | 3833702 | - | 76 | 154243958 | Xaut_R0039 | - | 16 Met tRNA |
| 3866355 | 3866429 | - | 75 | 154243958 | Xaut_R0040 | - | 01 Gly tRNA |
| 4013682 | 4013766 | + | 85 | 154243958 | Xaut_R0041 | - | 15 Leu tRNA |
| 4021550 | 4021625 | + | 76 | 154243958 | Xaut_R0042 | - | 13 Val tRNA |
| 4021933 | 4022009 | + | 77 | 154243958 | Xaut_R0043 | - | 06 Asp tRNA |
| 4044275 | 4044349 | + | 75 | 154243958 | Xaut_R0044 | - | 20 Trp tRNA |
| 4151450 | 4151523 | + | 74 | 154243958 | Xaut_R0045 | - | 08 Ser tRNA |
| 4206419 | 4206510 | + | 92 | 154243958 | Xaut_R0046 | - | 08 Ser tRNA |
| 4500625 | 4500701 | - | 77 | 154243958 | Xaut_R0047 | - | 09 His tRNA |
| 4520431 | 4520515 | + | 85 | 154243958 | Xaut_R0048 | - | 15 Leu tRNA |
| 4585071 | 4585147 | + | 77 | 154243958 | Xaut_R0049 | - | 03 Pro tRNA |
| 4619775 | 4619849 | - | 75 | 154243958 | Xaut_R0050 | - | 04 Glu tRNA |
| 4626767 | 4626843 | + | 77 | 154243958 | Xaut_R0051 | - | 03 Pro tRNA |
| 4627954 | 4628030 | + | 77 | 154243958 | Xaut_R0052 | - | 11 Arg tRNA |
| 4690306 | 4690381 | - | 76 | 154243958 | Xaut_R0053 | - | 07 Asn tRNA |
| 4692607 | 4692680 | - | 74 | 154243958 | Xaut_R0054 | - | 19 Cys tRNA |
| 4795355 | 4795444 | - | 90 | 154243958 | Xaut_R0055 | - | 08 Ser tRNA |
| 4841804 | 4841879 | - | 76 | 154243958 | Xaut_R0056 | - | 10 Lys tRNA |
| 4865618 | 4865695 | + | 78 | 154243958 | Xaut_R0057 | - | 03 Pro tRNA |
| 5053633 | 5053709 | + | 77 | 154243958 | Xaut_R0058 | - | 16 Met tRNA |
| 5204921 | 5204996 | - | 76 | 154243958 | Xaut_R0059 | - | 17 Phe tRNA |

